View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_36 (Length: 291)
Name: NF5595_high_36
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 39840751 - 39840484
Alignment:
| Q |
13 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatcaat |
112 |
Q |
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| T |
39840751 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcccgatttgaataacctttatgaaatcaat |
39840652 |
T |
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| Q |
113 |
aaccagtctgagatctcttttgctatacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaacca |
212 |
Q |
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| T |
39840651 |
aaccagtctgagatctcttttgctatacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaacca |
39840552 |
T |
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| Q |
213 |
ttaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattata |
280 |
Q |
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| T |
39840551 |
ttaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattata |
39840484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 39845717 - 39845448
Alignment:
| Q |
14 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatc--aa |
111 |
Q |
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| T |
39845717 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtactggtcccttccatcctgattctaaaaaactttctgagattcaaa |
39845618 |
T |
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| Q |
112 |
taaccagtctgagatctcttttgcta------tacacataggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaag |
205 |
Q |
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| T |
39845617 |
taatcata-----atctctttttccaaatccatacacatgggcttcaaaagttgcatattccttgtcagcattcatggcttgaaatgtgatacggtaaag |
39845523 |
T |
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| Q |
206 |
gaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattata |
280 |
Q |
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| T |
39845522 |
gaaacaattaaccatttgcgaaataaactcatcattaacgaccaattggtagtcgttccgagtttgtgaattata |
39845448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 35162490 - 35162233
Alignment:
| Q |
17 |
ttgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataacctttatgaaatcaataacc |
116 |
Q |
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| T |
35162490 |
ttgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtccctttgatcctgattctaataacctttcttaaatc------- |
35162398 |
T |
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| Q |
117 |
agtctgagatctcttttgctatacacata------ggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaac |
210 |
Q |
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| T |
35162397 |
-----gaactctctttttccatatccaaacactatggcttcgaaagttgcatattccttgtcagcattgctggcttgaaaggtgatacagtaaaggaaac |
35162303 |
T |
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| Q |
211 |
cattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattata |
280 |
Q |
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| T |
35162302 |
cattaacaaattgtgaagtaaacgtatcaacaacgaccaattggtagtcgttctgagtttgtgaattata |
35162233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 44630826 - 44630901
Alignment:
| Q |
205 |
ggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattata |
280 |
Q |
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| T |
44630826 |
ggaaaccattaaccatttgcgaaataaactcatcattaacgaccaattggtagtggttctgagtttgtgaattata |
44630901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 280
Target Start/End: Original strand, 44797747 - 44797881
Alignment:
| Q |
146 |
ggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaaccattaaccatttgcgaaataaactcatcaataacg |
245 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||| | ||||| ||||| ||||| |||| |
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| T |
44797747 |
ggcttcgaaagttgcatattccacgtcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacatatcgcgaagtaaacgtatcaacaacg |
44797846 |
T |
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| Q |
246 |
accaattggtagtggttctgagtttgtgaattata |
280 |
Q |
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| T |
44797847 |
accaattggtagtggttctgagtttgtgaattata |
44797881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 44797621 - 44797708
Alignment:
| Q |
14 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttgatcctgatttgaataaccttt |
101 |
Q |
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| T |
44797621 |
atattgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtcccttccatcctgattataataaccttt |
44797708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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