View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_38 (Length: 280)
Name: NF5595_high_38
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 5017476 - 5017746
Alignment:
| Q |
1 |
gcaaccatccctcccatttttcagacattcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttc |
100 |
Q |
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| T |
5017476 |
gcaaacatccctcccatttttcagacattcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttc |
5017575 |
T |
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| Q |
101 |
ctaatatgttctaccatgctggatacacatttcctggatttccaggtttgtatgcaactttttctcttcagatgacttgtccttactgggatatccagga |
200 |
Q |
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| T |
5017576 |
ctaatatgttctaccatgctggatacacatttcccggatttccaggtttgtatgcaactttttctcttcagatgacttgtccttactgggatttccagga |
5017675 |
T |
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| Q |
201 |
ttgaacataatgatctatactgattgatatatcattttgtataaacttttaaaactcatttttagtattat |
271 |
Q |
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| T |
5017676 |
ttgaacataatgatctatactgattgatatatcattttgtataaactcttaaaactcatttttagtattat |
5017746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 5005562 - 5005605
Alignment:
| Q |
7 |
atccctcccatttttcagacattcaatggtaatggctggcaagc |
50 |
Q |
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| T |
5005562 |
atccctcccatttttcagacattcaatgttaatggctggcaagc |
5005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 5005614 - 5005661
Alignment:
| Q |
131 |
ttcctggatttccaggtttgtatgcaactttttctcttcagatgactt |
178 |
Q |
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| T |
5005614 |
ttcctggctttccaggtatgtatggaactttttctcttcatatgactt |
5005661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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