View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_39 (Length: 271)
Name: NF5595_high_39
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 36 - 262
Target Start/End: Complemental strand, 4614391 - 4614164
Alignment:
| Q |
36 |
aaggaggtattcgttagaggactcaatgagaaacatgtttacaccaatcacatcattatttcttnnnnnnn--tcgcataattatgtcaattttgtcggt |
133 |
Q |
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| T |
4614391 |
aaggaggtattcgttagtggactcaatgagaaacatgtttacaccaatcacatcattatttcttaaaaaaaagtcgcataattatgtcaattttgtcggt |
4614292 |
T |
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| Q |
134 |
tagttcttcaaatatctctaaaaataacatttagcgtgatttgattggtatataaaagtttttacaccgtcaaagcatgcctattaaactcaacaaatta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
4614291 |
tagttcttcaaatatctctaaaaataacatttagcgtgatttgattggtatataaaag-ttttacaccgtcaaagcatgcctattaatctcaacaaatta |
4614193 |
T |
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| Q |
234 |
cttgtccttaacaaaactataagtattat |
262 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4614192 |
cttgtccttaacaaaactataagtattat |
4614164 |
T |
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