View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_42 (Length: 252)
Name: NF5595_high_42
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 4614655 - 4614425
Alignment:
| Q |
18 |
ataaatattagaaaagagtttggttgtttctccagcaaagatcaaatcattgcgggagttccaaatttaccacacaacatcatgccagaaattcacgaac |
117 |
Q |
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| T |
4614655 |
ataaatatttgaaaagagtttggttgtttctcgagcaaagatcaaatcattgcgggagttccaaatctaccacacaacatcatgccagaaattcacgaac |
4614556 |
T |
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| Q |
118 |
tgggttcacgtacatgctaatatgcacttactactaacagtaacgacagaaacctaaatcaaaactaaaaatcgttccataaaccctaaacctcaacaac |
217 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
4614555 |
tgggttcacgtacatgctaacctgcactttctactaacagtaacgacagaaacctaaatcaaaactaaaagtcgttccataaaccctaaaccacaacaac |
4614456 |
T |
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| Q |
218 |
a---acaaaggaagagaaacggagaataatc |
245 |
Q |
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| T |
4614455 |
aacaacaaaggaagagaaacggagaataatc |
4614425 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 31223301 - 31223256
Alignment:
| Q |
51 |
agcaaagatcaaatcattgcgggagttccaaatttaccacacaaca |
96 |
Q |
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| T |
31223301 |
agcaaagatcaaatcattgcgggagttccaaacagaccacacaaca |
31223256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19915815 - 19915766
Alignment:
| Q |
47 |
ctccagcaaagatcaaatcattgcgggagttccaaatttaccacacaaca |
96 |
Q |
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| T |
19915815 |
ctccagcaaagatcaaatcaatgcgggaattccagacataccacacaaca |
19915766 |
T |
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