View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_44 (Length: 250)
Name: NF5595_high_44
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_44 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 31612994 - 31613227
Alignment:
| Q |
17 |
acgtagtaaacctcgaaacaaatctttaccttaacgtaatactcaacgcggtagcagagatgccagcgttcatgataacagcaatcttgttggataagtt |
116 |
Q |
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| T |
31612994 |
acgtagtaaacctcgaaacaaatctttaccttaacgtaatactcaacgcagtggcggagatgccagcgttcatgataacagcaatcttgttggataagtt |
31613093 |
T |
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| Q |
117 |
tgggaggaaaccattaacaatagggacattatggttcagtggannnnnnngttttgtggggagtttgatgagaaataagggggtgtggaaaggaatgaaa |
216 |
Q |
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| T |
31613094 |
tgggaggaagccattaacaatagggacattatggttcagtggattcttttgttttgtggggagtttgatgagaaataagggggtgtggaaaggaatgaaa |
31613193 |
T |
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| Q |
217 |
atggtgtgtggaattttgggaatatttgggatgg |
250 |
Q |
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| T |
31613194 |
atggtgtgtggaattttgggaatatttgggatgg |
31613227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 34430834 - 34430642
Alignment:
| Q |
58 |
ctcaacgcggtagcagagatgccagcgttcatgataacagcaatcttgttggataagtttgggaggaaaccattaacaatagggacattatggttcagtg |
157 |
Q |
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| T |
34430834 |
ctcaatgcggtagcagaaatgccggcgtttgcgataacggcggtgttgttggataggtttgggaggaagccattgacaatagggacaatgtggtttagtg |
34430735 |
T |
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| Q |
158 |
gannnnnnngttttgtggggagtttgatgagaaataagggggtgtggaaaggaatgaaaatggtgtgtggaattttgggaatatttgggatgg |
250 |
Q |
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| T |
34430734 |
gattcttttgtttgatggggagtttgatgagtaatgtaggggtgtggaaagtaattaaaatggtttgtggagttttggggatatttggaatgg |
34430642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 34418573 - 34418416
Alignment:
| Q |
70 |
gcagagatgccagcgttcatgataacagcaatcttgttggataagtttgggaggaaaccattaacaatagggacattatggttcagtggannnnnnngtt |
169 |
Q |
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| T |
34418573 |
gcagagatgccagcattcacgataaccgcagtgttattggataggtttggaaggaaaccattgacaatagggacaatgtggtttagtggattcttttgtt |
34418474 |
T |
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| Q |
170 |
ttgtggggagtttgatgagaaataagggggtgtggaaaggaatgaaaatggtgtgtgg |
227 |
Q |
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| T |
34418473 |
tgctggggagttttatgggtaatgtaggggtgtggaaagtaattaaattggtgtgtgg |
34418416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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