View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_5 (Length: 525)
Name: NF5595_high_5
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 38983224 - 38983723
Alignment:
| Q |
8 |
ccaagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcagagcagatgttttggaatt |
107 |
Q |
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| T |
38983224 |
ccaagaatattagaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatgaggtaactcatagcagacgttttgggatt |
38983323 |
T |
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| Q |
108 |
ttttccagagttcttgtggatgtggacctatctgagcagctctttgaaactgttgttgtggaaagggaagatcacgctctgtccattgatgtcttttatg |
207 |
Q |
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| T |
38983324 |
ttttccagagttcttgtggatgtggacctatctgagcagctctttgaaactgttgttgtggaaagggaagatcatgctctgtccattgatgtcttttatg |
38983423 |
T |
|
| Q |
208 |
ataagcatccttccttctgtgctaattacaaaaccttgggacataacttaatcacacaaacaatactgaagtgcctgctagaatgaaaattaggactgat |
307 |
Q |
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| T |
38983424 |
agaagcatccttccttctgtgctaattgcaaaaccttaggacatagcttaatcacacaaacaatactgaagtgcctgctagaatgaaaactaggactgat |
38983523 |
T |
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| Q |
308 |
ttgaatggaaagaaacatgcttctaacacatccaatgctttcaaaatcgtatttttcaagaaacaaggtggacttgatgtgcatagcaagaaaaatcttg |
407 |
Q |
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| T |
38983524 |
ttgaatggaaagaaacatgcttctaacacatccaatgctttcaaaatcgtatttttcaagaaacaaggtggacttgatgtgcatagcaagaaaaatcctg |
38983623 |
T |
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| Q |
408 |
caagtgcgattctcaatgttgaagaaattgctactgattatgttcatcatgagattcctcagtctgagatcgttcctgctgactctatcaatatcagtaa |
507 |
Q |
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| T |
38983624 |
caagtgggattctcaatgttgaagaaattgctactgattatgttcatcatgagattcctcagtctgagatcgttcctgccgactctatcaatatcagtaa |
38983723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 28103033 - 28102963
Alignment:
| Q |
9 |
caagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
79 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||| || ||||| || |||||||| |||||||| |
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| T |
28103033 |
caagaatattggaggaagagaaccctttttgagattgcttatggtttaggcactcctcttgctattgatga |
28102963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 36904968 - 36905038
Alignment:
| Q |
9 |
caagaatattcgaggaagacaaccctgtttgagattgcttcaggcttaggtacccctcttgcaattgatga |
79 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||| || ||||| || |||||||| |||||||| |
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| T |
36904968 |
caagaatattggaggaagacggccctttttgagattgctttcggtttaggcactcctcttgctattgatga |
36905038 |
T |
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