View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_57 (Length: 208)
Name: NF5595_high_57
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_57 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 36474138 - 36474331
Alignment:
| Q |
15 |
tatatcaacatggataagaactttaattaaagaaaagaaatttaagattcaattttgaaggaatcaggtctcaatcaccagtgaaaaatatgattagcaa |
114 |
Q |
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| T |
36474138 |
tatatcaacatggataagaactttaattaaagaaaagaaatttaagattcaattttgaaggaatcaggtctcaatcaccagtgaaaaatatgattagcaa |
36474237 |
T |
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| Q |
115 |
agttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaagaagtgctaaatca |
208 |
Q |
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| T |
36474238 |
agttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaagaagtgctaaatca |
36474331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 36465040 - 36465153
Alignment:
| Q |
95 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
194 |
Q |
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| T |
36465040 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
36465139 |
T |
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| Q |
195 |
gaagtgctaaatca |
208 |
Q |
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| T |
36465140 |
gaagtgctaaatca |
36465153 |
T |
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