View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_high_8 (Length: 515)
Name: NF5595_high_8
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 42518962 - 42519254
Alignment:
| Q |
11 |
cagagaacagttttattattgaaagtgatgaagaagatgataaggattttaacaaaggtgatgatggaaatgattctgattcttccaattactcaaatga |
110 |
Q |
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| T |
42518962 |
cagagaacagttttattattgaaagtgatgaagaagatgataaggattttaacaaaggtgatgatggaaatgattctgattcttccaattactcaaatga |
42519061 |
T |
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| Q |
111 |
aaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagttacaggttaagtccttttttcaatccccctagatttcagtgcacctgt |
210 |
Q |
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| T |
42519062 |
aaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagttacaggttaagtccttttttcaatccccctagatttcagtgcacctgt |
42519161 |
T |
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| Q |
211 |
gtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaagggaatccttggaatttctggaaataatggttttaattgtca |
303 |
Q |
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| T |
42519162 |
gtgtgtcacttcacgtacctttttgtttgtttctgtttctgcaaatgtaaagggaatccttgtaatttctggaattaatggttttacttgtca |
42519254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 332 - 497
Target Start/End: Original strand, 42519283 - 42519448
Alignment:
| Q |
332 |
gatataatccttgtaaagtagttttactttttctggtggatgtgattcatctgaaattcctttatgaactttattcattagtttctgctaataaagagaa |
431 |
Q |
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| T |
42519283 |
gatataatccttgtaaagtagttttaatttttctggtggatgtgattcatctgaaattcctttatgaactttattcattagtttctgctaataaagagaa |
42519382 |
T |
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| Q |
432 |
tagaatatatctcttttctggtcttaaaccccgattatatggaacgagggtcctggtaatctgaag |
497 |
Q |
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| T |
42519383 |
tagaatatatctcttttctggtcttaaaccccgattgtatggaacgagggtccaggtaatctgaag |
42519448 |
T |
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