View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_1 (Length: 828)
Name: NF5595_low_1
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_1 |
 | |
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| [»] scaffold0489 (2 HSPs) |
| | |
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| [»] scaffold0140 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 777; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 10 - 810
Target Start/End: Complemental strand, 2462330 - 2461530
Alignment:
| Q |
10 |
acatcatcacaaccacatttcagctttgctagtattgcaccgcgcaatataaagattcatagctttatctaaaccgaaaatgcagattaaaacctaaacc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2462330 |
acatcatcacaaccacatttcagctttgctagtattgcaccgcgcaatataaagattcatagctttatctaaaccgaaaatgcagattaaaacctaaacc |
2462231 |
T |
|
| Q |
110 |
agtttagaaaacttgagcatgatcaccaccacaacctaatactttttcaggacaacttgcttcatcaagaagccatttctcaagcaaagaaaagggcatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2462230 |
agtttagaaaacttgagcatgatcaccaccacaacctaatactttttcaggacaacttgcttcatcaagaagccatttctcaagcaaagaaaagggcatt |
2462131 |
T |
|
| Q |
210 |
gtttccgaaccaacatcaggcttactttcatcttgtaaaatcgttgcgtctggtgacaaagactgatgagaaaattcagaattcgatgactccaaagact |
309 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462130 |
gtttctgaaccaacatcaggcttactttcatcttgtaaaatcgttgcgtctggtgacaaagactgatgagaaaattcagaattcgatgactccaaagact |
2462031 |
T |
|
| Q |
310 |
ctaaaggctcaaaaccaaacaaagattcaaatgtttcagacaatatttcaccctttgttccactactagaagcagaatcaaagttgttgaaggaattttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2462030 |
ctaaaggctcaaaaccaaacaaagattcaaatgtttcagacaatatttcaccctttgttccactactagaagcagaatcaaagttgttgaaggaattttg |
2461931 |
T |
|
| Q |
410 |
tgtcacagctgaattagtacttaccgatgatttaatcggatttttcatccaaccctttaataaacgcgctatgttatctgcacttgaagcatagcaaaac |
509 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461930 |
tgtcacaactgaattagtacttaccgatgatttaatcggatttttcatccaaccctttaataaacgcgctatgttatctgcacttgaagcatagcaaaac |
2461831 |
T |
|
| Q |
510 |
gattgacctggttctttagtggaagaaaatgagttactatttgtagggtttgaagtagaaaagttaggagataatttttgtggtgaaagtgcttcattaa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461830 |
gattgacctggttctttagtggaagaaaatgagttactatttgtagggtttgaagtagaaaagttaggagataatttttgtggtgaaagtgcttcattaa |
2461731 |
T |
|
| Q |
610 |
gtgcttttttggccatttgaatatctgtttgaagtcttctttcccattgacctcttggaatcctttgagttgctgaaaatttttcttcttcaaaattaat |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2461730 |
gtgcttttttggccatttgaatatctgtttgaagtcttctttcccattgacctcttggaattctttgagatgctgaaaatttttcttcttcaaaattaat |
2461631 |
T |
|
| Q |
710 |
gcattcagcattattacctgtttgtgattttcttagcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtat |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2461630 |
gcattcagcattattacctgtttgtgatttctttagcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtat |
2461531 |
T |
|
| Q |
810 |
g |
810 |
Q |
| |
|
| |
|
|
| T |
2461530 |
g |
2461530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 810
Target Start/End: Original strand, 33928499 - 33928544
Alignment:
| Q |
765 |
ttccaatagttttttatgtcattatctgttctttgtggaaggtatg |
810 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
33928499 |
ttccaataattctttatatcattatctgttctttgtggaaggtatg |
33928544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 600 - 664
Target Start/End: Complemental strand, 3617182 - 3617118
Alignment:
| Q |
600 |
gcttcattaagtgcttttttggccatttgaatatctgtttgaagtcttctttcccattgacctct |
664 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
3617182 |
gcttcactaagtgcttttttggccatgtgaatatcagtttgaagtcttctttcccattgtcctct |
3617118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 744 - 810
Target Start/End: Complemental strand, 3617041 - 3616975
Alignment:
| Q |
744 |
agcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtatg |
810 |
Q |
| |
|
||||| || ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3617041 |
agctttttcttcaaataagtgttccaatagttttttatgtcattgtctgttctttgtggaaggtatg |
3616975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 3617348 - 3617295
Alignment:
| Q |
449 |
atttttcatccaaccctttaataaacgcgctatgttatctgcacttgaagcata |
502 |
Q |
| |
|
||||||||||||||| || || ||||| ||||||||||| |||||||| ||||| |
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|
| T |
3617348 |
atttttcatccaacctttcaacaaacgagctatgttatcagcacttgatgcata |
3617295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 754 - 805
Target Start/End: Original strand, 13993376 - 13993427
Alignment:
| Q |
754 |
tcaaatgagtattccaatagttttttatgtcattatctgttctttgtggaag |
805 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||||||| |||||| |
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| T |
13993376 |
tcaaatgtgtattccaatagtttttgatgtcattgtctgttctttctggaag |
13993427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 797
Target Start/End: Original strand, 55166086 - 55166139
Alignment:
| Q |
744 |
agcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctt |
797 |
Q |
| |
|
||||||||| | ||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
55166086 |
agcttctttcttaaatgtgtattccaataattttttatctcattatctgttctt |
55166139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 662
Target Start/End: Original strand, 13993252 - 13993302
Alignment:
| Q |
612 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
662 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
13993252 |
gcttgttttgccatatggatatctgtttgaagtcttctctcccattgacct |
13993302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 662
Target Start/End: Original strand, 10132 - 10182
Alignment:
| Q |
612 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
662 |
Q |
| |
|
|||| ||||||||| |||||||||||||| || |||||||||||||||||| |
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|
| T |
10132 |
gcttgtttggccatatgaatatctgtttgtagccttctttcccattgacct |
10182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 810
Target Start/End: Original strand, 10261 - 10315
Alignment:
| Q |
756 |
aaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtatg |
810 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
10261 |
aaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatg |
10315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 756 - 810
Target Start/End: Complemental strand, 10767 - 10713
Alignment:
| Q |
756 |
aaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtatg |
810 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
10767 |
aaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatg |
10713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 662
Target Start/End: Complemental strand, 10896 - 10846
Alignment:
| Q |
612 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
662 |
Q |
| |
|
|||| ||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
10896 |
gcttgtttggccatatgaatatctgtttgtagccttctttcccattgacct |
10846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 797
Target Start/End: Complemental strand, 4686174 - 4686121
Alignment:
| Q |
744 |
agcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctt |
797 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
4686174 |
agcttctttttcaaccttgtattccaatagttctttatgtcattatcagttctt |
4686121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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