View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_10 (Length: 500)
Name: NF5595_low_10
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_10 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 38837418 - 38837894
Alignment:
| Q |
18 |
catggatccattggcaccatttcctcttcgttcaacaaacgtctaacattggcaataatttcccttggattatagttgggaatgtaagaactccaacctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38837418 |
catggatccattggcaccatttcctcttcgttcaacaaacgtctaacattggcaataatttcccttggattatagttgggaatgtaagaactccaacctg |
38837517 |
T |
|
| Q |
118 |
ttccaatttcttcactaccattgacaagaaccaaaggtatgatgggtatgtacctatgtggaagtaaaatttgaatcagttctatgtatacggtgtcctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38837518 |
ttccaatttcttcactaccattgacaagaaccaaaggtatgatgggtatgtacctatgtggaagtaaaatttgaatcagttctatgtctacggtgtcctt |
38837617 |
T |
|
| Q |
218 |
agttgtcagtaatcacaaacaaaatagcctcttagaaaaaacggagaaaacaaaataccagtttggttcaatggattttccctccacattcaagtattta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38837618 |
agttgtcagtaatcacaaacaaaatagcctcttagaaaaaacggagaaaacaaaataccagtttggttcaatggattttccctcctcattcaagtattta |
38837717 |
T |
|
| Q |
318 |
agaagcttatcatcatcttcatggaagaggaaacgagtaacaatatttagctcggtgtaaatgtatttgggacttgcatggtctttaccaccctggagag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38837718 |
agaagcttatcatcatcttcatggaagaggaaacgagtaacaatatttagctcggtgtaaatgtatttgggacttgcatggtctttaccaccctggagag |
38837817 |
T |
|
| Q |
418 |
ggaatatccaataaatataaaatttaaaaagaaacgtggggagttttgcaataacaacatatacaggttcatctcac |
494 |
Q |
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| T |
38837818 |
ggaatatccaataaatataaaatttaaaaagaaacgtggggagttttgcaataacaacatatacaggttcatctcac |
38837894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 9872123 - 9872524
Alignment:
| Q |
18 |
catggatccattggcaccatttcctcttcgttcaacaaacgtctaacattggcaataatttcccttggattatagttgggaatgtaagaactccaacctg |
117 |
Q |
| |
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||||||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||| | ||||||||||| |||||| ||||||||||||||| |
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| T |
9872123 |
catggatccataggcaccatttcctcgtcattcaacaaacgtcgaacattggcaataatttctcggggattatagttaggaatgaaagaactccaacctg |
9872222 |
T |
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| Q |
118 |
ttccaatttcttcactaccattgacaagaaccaaaggtatgatgggtatgtacctatgtgg----aagtaaaatttgaatcagttctatgt--atacggt |
211 |
Q |
| |
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| |||||| | |||||||||||||||||||||||||| || || ||||||||||| |||| ||| | |||||||||||| ||||||| || ||| |
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| T |
9872223 |
tcccaattccctcactaccattgacaagaaccaaaggaataattggtatgtacctgcgtggtgacaagcagaatttgaatcagctctatgtcgatgaggt |
9872322 |
T |
|
| Q |
212 |
gtccttagttgt----cagtaatcacaaacaaaatagcctcttagaaaaaacggagaaaacaaaataccagtttggttcaatggattttccctccacatt |
307 |
Q |
| |
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||||||||||| | |||||||| ||||||| || || ||| | ||| ||||||||||||||||||||||||||||| | || ||| |||| |
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| T |
9872323 |
-tccttagttgttacatacaaatcacaatcaaaataacc-gttgaaaaggaaagag-aaacaaaataccagtttggttcaatggatctcccatcctcatt |
9872419 |
T |
|
| Q |
308 |
caagtatttaagaagcttatcatcatcttcatggaagaggaaacgagtaacaatatttagctcggtgtaaatgtatttgggacttgcatggtctttacca |
407 |
Q |
| |
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|||||| | |||||||||||||||||| ||||||||||| ||| || ||| ||||||||| ||||| |||||| ||| ||||||||||||||| ||| |
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| T |
9872420 |
caagtactcaagaagcttatcatcatcagcatggaagaggctacgggttacagtatttagctgagtgtagatgtatctggaacttgcatggtcttttcca |
9872519 |
T |
|
| Q |
408 |
ccctg |
412 |
Q |
| |
|
||||| |
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|
| T |
9872520 |
ccctg |
9872524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 414
Target Start/End: Original strand, 33367668 - 33367853
Alignment:
| Q |
227 |
taatcacaaacaaaatagcctcttagaaaaaacggagaaaacaaaataccagtttggttcaatggattttccctccacattcaagtatttaagaagctta |
326 |
Q |
| |
|
||||||||| |||||||||| ||| ||| || ||||||| |||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||| |
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| T |
33367668 |
taatcacaaccaaaatagcca-ttacaaagaaaggagaaa-caaaataccagtttggttgaatggacctcccatcctcattcaagtattcaagaagctta |
33367765 |
T |
|
| Q |
327 |
tcatcatcttcatggaagaggaaacgagtaacaatatttagctcggtgtaaatgtatttgggacttgcatggtctttaccaccctgga |
414 |
Q |
| |
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|||||||| || ||||||||| ||||||||| |||||||| |||| | | | ||| |||||||||||||||||||||||||| |
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| T |
33367766 |
tcatcatccacagggaagaggagacgagtaacgcaatttagcttaatgtataactttctggaacttgcatggtctttaccaccctgga |
33367853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 265 - 358
Target Start/End: Complemental strand, 20102432 - 20102339
Alignment:
| Q |
265 |
aaacaaaataccagtttggttcaatggattttccctccacattcaagtatttaagaagcttatcatcatcttcatggaagaggaaacgagtaac |
358 |
Q |
| |
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|||||||||||||||||||||||| ||| || || ||| |||||||||||| |||||||||||||||||| || ||||||||| ||||||||| |
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| T |
20102432 |
aaacaaaataccagtttggttcaacggacttcccatcctcattcaagtattcaagaagcttatcatcatccacagggaagaggagacgagtaac |
20102339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 20102682 - 20102599
Alignment:
| Q |
26 |
cattggcaccatttcctcttcgttcaacaaacgtctaacattggcaataatttcccttggattatagttgggaatgtaagaact |
109 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||| ||||| |||||||||| | ||||| ||| |||||||| | |||||| |
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| T |
20102682 |
cattggcaccatttcctctttattcaagaaacgtcttacattctcaataatttcacatggatgatatttgggaatatcagaact |
20102599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 358
Target Start/End: Original strand, 42 - 171
Alignment:
| Q |
227 |
taatcacaaacaaaatagcctcttagaaaaaacggagaaaacaaaataccagtttggttcaatggattttccctccacattcaagtatttaagaagctta |
326 |
Q |
| |
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||||||||| |||||||||| ||| ||| || ||||||| ||||||||||||||||||||||||| || || | | |||||||||||| |||||||||| |
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| T |
42 |
taatcacaaccaaaatagcca-ttacaaagaaaggagaaa-caaaataccagtttggttcaatggaattcccattctcattcaagtattcaagaagctta |
139 |
T |
|
| Q |
327 |
tcatcatcttcatggaagaggaaacgagtaac |
358 |
Q |
| |
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|||||||| || ||||||||| ||||||||| |
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|
| T |
140 |
tcatcatccacagggaagaggagacgagtaac |
171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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