View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_12 (Length: 481)
Name: NF5595_low_12
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 4 - 465
Target Start/End: Complemental strand, 39981755 - 39981294
Alignment:
| Q |
4 |
atgtcgaagaatattttgagcctagtatcaaagctttggtctgaaatacagtcccagaactccctaaactggatcttgttaatcgaacctccttgaatcc |
103 |
Q |
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| T |
39981755 |
atgtcaaagaatattttgagcctagtatcaaagctttggtctgaaatacagtcccagaactccctaaactggatcttgttaatcgaacctccttgaatcc |
39981656 |
T |
|
| Q |
104 |
ctctctgccgagcaagagtatcaaaaagcatctcagcataggcctttgactcttcattcaatcctacaattgaatccaaagaaacacttcgaaattactc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39981655 |
ctctctgccgagcaagagtatcaaaaagcatctcagcataggcctttgactcttcattcaatcctacaattgaatccaaagaaacacttagaaattactc |
39981556 |
T |
|
| Q |
204 |
tatacttataatcaaagtttcaaatcacttgatcgtgctgcaatctttgatattgcagaaaattactgtcaaatatgactgatgcaactttaatagttgt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981555 |
tatacttataatcaaagtttcaaatcacttgatcgtgctgcaatctttgatattgcagaaaattactgtcaaatatgactgatgcaactttaatagttgt |
39981456 |
T |
|
| Q |
304 |
gatggtagagacatcaaaaacattggttatactatccaagttcttaacttatcatttatcatttgaagcaatatggtaaaacaagcatacctatgcattt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981455 |
gatggtagagacatcaaaaacattggttatactatccaagttcttaacttatcatttatcatttgaagcaatatggtaaaacaagcatacctatgcattt |
39981356 |
T |
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| Q |
404 |
agcaaagagagtgcgaggaagataaccgtcagttgtcacggtaagcttatcaaacactttct |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39981355 |
agcaaagagagtgcgaggaagataaccgtcagttgtcacggtaagcttatcaaacactttct |
39981294 |
T |
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