View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_14 (Length: 442)
Name: NF5595_low_14
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_14 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 19292748 - 19292324
Alignment:
| Q |
16 |
acatcatctattgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcacaaatgtaa |
111 |
Q |
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| T |
19292748 |
acatcaactattgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcacaaatgtaa |
19292649 |
T |
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| Q |
112 |
gatttagtgatgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
211 |
Q |
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| T |
19292648 |
gattttgcgatgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
19292549 |
T |
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| Q |
212 |
tatatagcctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaag |
311 |
Q |
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| T |
19292548 |
ta----gcctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaag |
19292455 |
T |
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| Q |
312 |
ccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
411 |
Q |
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| T |
19292454 |
ccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
19292355 |
T |
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| Q |
412 |
gccaaataatattgaaagcttcactaaactc |
442 |
Q |
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| T |
19292354 |
gccaaataatattgaaagcttcactaaactc |
19292324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
360 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
410 |
Q |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 435
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
358 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
435 |
Q |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 435
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
358 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
435 |
Q |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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