View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595_low_18 (Length: 422)

Name: NF5595_low_18
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595_low_18
NF5595_low_18
[»] chr3 (18 HSPs)
chr3 (5-403)||(6527229-6527627)
chr3 (8-391)||(6848813-6849196)
chr3 (91-201)||(6558582-6558691)
chr3 (26-138)||(6938784-6938892)
chr3 (65-137)||(6796826-6796898)
chr3 (172-250)||(6938661-6938742)
chr3 (274-387)||(6558829-6558940)
chr3 (153-254)||(6796932-6797033)
chr3 (280-391)||(6550308-6550419)
chr3 (75-161)||(6800093-6800178)
chr3 (145-250)||(6789191-6789299)
chr3 (332-391)||(6789464-6789523)
chr3 (281-389)||(6797212-6797320)
chr3 (26-75)||(6550000-6550049)
chr3 (83-117)||(8593966-8594000)
chr3 (157-198)||(7745471-7745512)
chr3 (163-211)||(8451720-8451767)
chr3 (156-192)||(8594045-8594081)
[»] scaffold0425 (1 HSPs)
scaffold0425 (65-391)||(11975-12301)
[»] chr1 (1 HSPs)
chr1 (163-201)||(7982062-7982100)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 6527229 - 6527627
Alignment:
Q  5 cgaagaatatcattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527229 cgaagaatatcattgttgagatgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgac 6527328  T
Q  105 ttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527329 ttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttc 6527428  T
Q  205 tgcatcattagaaggttcttttgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccatgacacactc 304  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  6527429 tgcatcattagaaggttcttctgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacacgctc 6527528  T
Q  305 ttttagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagttaagatcacgtataattatctcactggcttatctctcaga 403  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  6527529 ttttagtaatataaattgcatcatgtcatcttttccctagttttacattcaaacatagttaagatcacatataattatctcactggcttatctctcaga 6527627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 6848813 - 6849196
Alignment:
Q  8 agaatatcattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttg 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848813 agaatattattgttgagatgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttg 6848912  T
Q  108 tcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848913 tcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgc 6849012  T
Q  208 atcattagaaggttcttttgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccatgacacactcttt 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  6849013 atcattagaaggttcttctgtgctcaaaaagccacaacagttcgttaagcatatgttaactccattgtctttaatttctgcataccgtgacaccctcttt 6849112  T
Q  308 tagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagttaagatcacgtataattatctcactggc 391  Q
    | |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  6849113 tggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacatagttaagatcacatataattatctcactggc 6849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 6558582 - 6558691
Alignment:
Q  91 caccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaa 190  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6558582 caccagaagttgacttgtcaatttagtgaaattcaataaaactctacttt-cattgctgtacttctgattgtaattcaatactttttctcagtttgtgaa 6558680  T
Q  191 taagtttatct 201  Q
    || ||||||||    
T  6558681 taggtttatct 6558691  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 6938892 - 6938784
Alignment:
Q  26 tgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 125  Q
    |||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    |||||||    
T  6938892 tgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgacttgtcaattt----aaattca 6938797  T
Q  126 ataaaacactact 138  Q
    |||||||||||||    
T  6938796 ataaaacactact 6938784  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 6796826 - 6796898
Alignment:
Q  65 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactac 137  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6796826 tctttgtatgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactac 6796898  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 6938742 - 6938661
Alignment:
Q  172 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagccacaacagttc 250  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||   ||||||||||||||||||||    
T  6938742 ctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 6938661  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 6558829 - 6558940
Alignment:
Q  274 gtctttaatttctgcataccatgacacactcttttagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagttaagatcacg 373  Q
    |||||||||||||||||||  || ||| ||||||| |||||||||||||||  |  |||||| ||||||||||||| ||||||| ||| ||||||| ||     
T  6558829 gtctttaatttctgcatac--tgtcactctcttttggtaatataaattgcaacacatcatctcttccctagttttaaattcaaacataattaagataaca 6558926  T
Q  374 tataattatctcac 387  Q
    ||||||||||||||    
T  6558927 tataattatctcac 6558940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 6796932 - 6797033
Alignment:
Q  153 ttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgctcaaaaagccacaacagttcgt 252  Q
    ||||| ||| || ||||| ||||||||||||||||||||||| |||||| ||||||| ||| |||||||||  |||||||||||||  | ||||||||||    
T  6796932 ttctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtgctcaaaaagaaataacagttcgt 6797031  T
Q  253 ta 254  Q
    ||    
T  6797032 ta 6797033  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 6550308 - 6550419
Alignment:
Q  280 aatttctgcataccatgacacactcttttagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagttaagatcacgtataat 379  Q
    ||||| |||||| |||||||| |  |||| |||||| ||||||||| |  | ||  |||||||||||||||||||||| ||||||||||| || ||||||    
T  6550308 aatttttgcatatcatgacactcatttttggtaatacaaattgcatcacattattctttccctagttttacattcaaacatagttaagataacatataat 6550407  T
Q  380 tatctcactggc 391  Q
    ||||||||||||    
T  6550408 tatctcactggc 6550419  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 6800093 - 6800178
Alignment:
Q  75 tccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattg 161  Q
    |||||||||||||||| || |||| |||||||| |||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  6800093 tccttcctagttcatagactggaaattgacttgccaatttagggaaattcaataaaacacta-atttcattgcaatactactgattg 6800178  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 6789191 - 6789299
Alignment:
Q  145 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagcca 241  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||  ||||||| | |  |||| |||| ||||||  |||||   |||||||||||    
T  6789191 tgcagtacttctgattttaattcattaatttctctcagtttgtgaatatttttatctatttatatcactagagggttctgctgtgctgatcaaaaagcca 6789290  T
Q  242 caacagttc 250  Q
    |||||||||    
T  6789291 caacagttc 6789299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 6789464 - 6789523
Alignment:
Q  332 atcttttccctagttttacattcaaaaatagttaagatcacgtataattatctcactggc 391  Q
    |||||||||||||||||||||||||| | || |||||| || ||||||||||||||||||    
T  6789464 atcttttccctagttttacattcaaacacagctaagataacatataattatctcactggc 6789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 6797212 - 6797320
Alignment:
Q  281 atttctgcataccatgacacactcttttagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagttaagatcacgtataatt 380  Q
    |||||| |||| ||||| || || |||| |||||||||||||||| |  ||| |||||||||| ||||| ||||||  ||| ||||||| ||  ||||||    
T  6797212 atttctacatatcatgaaactcttttttggtaatataaattgcatcacatcaacttttccctatttttaaattcaatcataattaagataacacataatt 6797311  T
Q  381 atctcactg 389  Q
    |||||||||    
T  6797312 atctcactg 6797320  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 6550000 - 6550049
Alignment:
Q  26 tgtgatgtcaagactcaggcatccacttcaacatcttactctttgtatgt 75  Q
    |||||||||| ||||||||||||||||||||  ||| |||||||||||||    
T  6550000 tgtgatgtcaggactcaggcatccacttcaaagtctgactctttgtatgt 6550049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 8593966 - 8594000
Alignment:
Q  83 agttcatacaccggaagttgacttgtcaatttagt 117  Q
    ||||||||||| |||||||||||||||||||||||    
T  8593966 agttcatacactggaagttgacttgtcaatttagt 8594000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 7745512 - 7745471
Alignment:
Q  157 gattgtaattcattactttttctcagtttgtgaataagttta 198  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  7745512 gattgaaattcattactttttcacagtttgtgaataggttta 7745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 8451767 - 8451720
Alignment:
Q  163 aattcattactttttctcagtttgtgaataagtttatctttctgcatca 211  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  8451767 aattcattactttt-ctcagtttgtgaataggtctatctatctgcatca 8451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 8594045 - 8594081
Alignment:
Q  156 tgattgtaattcattactttttctcagtttgtgaata 192  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8594045 tgattgaaattcattattttttctcagtttgtgaata 8594081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 391
Target Start/End: Original strand, 11975 - 12301
Alignment:
Q  65 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11975 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactactattcattgcagtacttctgattgtaa 12074  T
Q  165 ttcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgctcaaaaagccacaacagttcgttaagcatatgtt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12075 ttcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgctcaaaaagccacaacagttcgttaagcatatgtt 12174  T
Q  265 aactccattgtctttaatttctgcataccatgacacactcttttagtaatataaattgcattatgtcatcttttccctagttttacattcaaaaatagtt 364  Q
    |||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  12175 aactccattgtcttaaatttctgcataccgtgacaccctcttttggtaatataaattgcatcatgtcatcttttccgtagttttacattcaaacatagtt 12274  T
Q  365 aagatcacgtataattatctcactggc 391  Q
    |||||||| ||||||||||||||||||    
T  12275 aagatcacatataattatctcactggc 12301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 7982062 - 7982100
Alignment:
Q  163 aattcattactttttctcagtttgtgaataagtttatct 201  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatct 7982100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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