View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_2 (Length: 736)
Name: NF5595_low_2
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 3 - 558
Target Start/End: Complemental strand, 41015747 - 41015191
Alignment:
| Q |
3 |
cacagacaatgaaatgcatcagaatcaaactgctgaaggcgatgctgtaccagcaaaagaattggattattcgttaccaaaattggttgggtcctctgaa |
102 |
Q |
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| T |
41015747 |
cacagacaatgaaatgcatcagaatcaaactgctgaaggcgatgctgtaccagcaaaagaattggattattcgttaccaaaattggttgggtcctctgaa |
41015648 |
T |
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| Q |
103 |
attgatcaagaaactctcaacatcattgacaaacacttttcttctcttgagcatgtggagcagttatgaggttagaatttttagtggttaaaatttagct |
202 |
Q |
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| T |
41015647 |
attgatcaagaaactctcaacatcattgacaaacacttttcttctcttgagtatgtggagcagttatgaggttagaatttttagtggttaaaatttagct |
41015548 |
T |
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| Q |
203 |
tctgcagaatgaagaaatctaaatgctgtatggtattattcaaggaaaaggctatgtaaaattagaattaggcaaaacggaagccaaacaatgtctctaa |
302 |
Q |
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| T |
41015547 |
tctgcagaatgaagaaatctaaatgttgtatggtattattcaaggaaaaggctatgtaaaattagaattaggcaaaacggaagccaaacaatgtctctaa |
41015448 |
T |
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| Q |
303 |
aatcagaacgtatacattttttgaactagttggatcgtgaacttgttatattttcagtttaatcatgatgtgattcaactgaagttaaacagaaaa-gaa |
401 |
Q |
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| T |
41015447 |
aatcagaacgtatccattttttgaattagttggatcgtgaacttgttatattttcagtttaatcatgatgtgattcaactgaagttaaacagaaaacgaa |
41015348 |
T |
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| Q |
402 |
tcagatgaattaatctagtcatgattcgaaaagaagtatcactggttcagttcggatggcctgtgatgaagtgaagtcgtcattagtttaccattgttat |
501 |
Q |
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| T |
41015347 |
tcagatgaactaatttagtcatgattcgaaaagaagtatcactgattcagttcggatggcctgtgatgaagtgaagtcgtcattagtttaccattgttat |
41015248 |
T |
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| Q |
502 |
tgcctaattctggcagaattctacaatactctgatacatccaattgcggggatcttg |
558 |
Q |
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| T |
41015247 |
tgcctaattctggcagaattctacaatactctgatacatccaattgcggggatcttg |
41015191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 607 - 717
Target Start/End: Complemental strand, 41015121 - 41015011
Alignment:
| Q |
607 |
ttgaagttctaacgcaaattatgatatatggatattgttgtcacaatatattgttagattaaaaaatcattttgatgtcacaatttgttttgaacattga |
706 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41015121 |
ttgaagttctaacgcaaattatgatatatggatattgttgtcacaatatattgttagattaaaaaatcattttgatgtcacaatttgttttgaaaattga |
41015022 |
T |
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| Q |
707 |
tggcttcgtgg |
717 |
Q |
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|||||||||| |
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| T |
41015021 |
aggcttcgtgg |
41015011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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