View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_21 (Length: 398)
Name: NF5595_low_21
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 44957806 - 44958112
Alignment:
| Q |
20 |
aagtcataaagaatggcttataatattttgatgaaaccagaaaaaaccaagattagatttgcagataattggactattccatcagagagagtaggaaagg |
119 |
Q |
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| T |
44957806 |
aagtcataaagaatggcttataatattttgatgaaaccagaaaaaaccaagattagatttgcagataattggaccattccatcagagagagtaggaaagg |
44957905 |
T |
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| Q |
120 |
aaatgtgctcatcaaaggcaagcatggacacaaggaaatcattacatgggtgatctatgttcctaggatcaagagtaatttaataagcatgggctaatta |
219 |
Q |
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| T |
44957906 |
aaatgtgctcatcaaaggcaagcatggacacaaggaaatcattacatgggtgatctatgttcctaggatcaagagtaatttaataagcatgggctaatta |
44958005 |
T |
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| Q |
220 |
ctagaaaaaggttttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataagagaattctaattaagagctcctatatctca |
319 |
Q |
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| T |
44958006 |
ctacaaaaaggttttactatgcacattgaacacaaccaaatataagtttttgaagttgaattaatataagagaattc----taagagctcctatatctca |
44958101 |
T |
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| Q |
320 |
taatagaatat |
330 |
Q |
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| T |
44958102 |
taatagaatat |
44958112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 44958306 - 44958374
Alignment:
| Q |
323 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgt |
391 |
Q |
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| T |
44958306 |
tagaatatttcaagtccaaatcaatgcaactaaatttcactattttgcaactgaggtaattgatgatgt |
44958374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 32561485 - 32561428
Alignment:
| Q |
215 |
aattactagaaaaaggttttactatgcacattgaacacaaccaaatataagtttttga |
272 |
Q |
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| T |
32561485 |
aattactagaaaatggttttactatgcatcttgaacacaatcaaattaaagtttttga |
32561428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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