View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_24 (Length: 349)
Name: NF5595_low_24
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 25620292 - 25620151
Alignment:
| Q |
170 |
atttgggaggatgtttggttttggttctgccattaaagaaattaagtttgacttaattgattttgtaaaactggttgtgattaaatattaattgaaagta |
269 |
Q |
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| T |
25620292 |
atttgagaggatgtttggttttggttctaccatgatagaaattaattttgagtaaattgattttgtaaaattgattataattaaatattaaatgaaagta |
25620193 |
T |
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| Q |
270 |
aatcgatttatgctcgactacattcatataaatgacttgaac |
311 |
Q |
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| T |
25620192 |
aagtgatttatgttgtactacattcatataaatgacttgaac |
25620151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 25627881 - 25627813
Alignment:
| Q |
67 |
tattgaaagtatattagcatcttacctgatcaagcttgccatttctaataactcttagctctcatgtgc |
135 |
Q |
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| T |
25627881 |
tattgaaagcatattagcattttacctgatcaagcttgccatttctaataactctttgctcccatgtgc |
25627813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 25617121 - 25617072
Alignment:
| Q |
3 |
tcgagtgagaagaatgaaatcataataaatttgcagaagcaatggcgagc |
52 |
Q |
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| T |
25617121 |
tcgagagaaaagaatgaaatcataataaatttgcagaagcaatggcgagc |
25617072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 25615960 - 25615898
Alignment:
| Q |
251 |
taaatattaattgaaagtaaatcgatttatgctcgactacattcatataaatgacttgaacaa |
313 |
Q |
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| T |
25615960 |
taaatattagataaaagtaaattgatttatattcgactacattcatataaatgactttaacaa |
25615898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 25624788 - 25624738
Alignment:
| Q |
88 |
ttacctgatcaagcttgccatttctaataactcttagctctcatgtgcact |
138 |
Q |
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| T |
25624788 |
ttacctgatcaagcctgctatttctaataactcttggctcccatgtgcact |
25624738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 25616178 - 25616126
Alignment:
| Q |
99 |
agcttgccatttctaataactcttagctctcatgtgcactagtggtacaagta |
151 |
Q |
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| T |
25616178 |
agcttgccctttctaattactcttggctcccatgtgcactggtggtacaagta |
25616126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 25629070 - 25629040
Alignment:
| Q |
15 |
aatgaaatcataataaatttgcagaagcaat |
45 |
Q |
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| T |
25629070 |
aatgaaatcataataaatttgcagaagcaat |
25629040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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