View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_25 (Length: 343)
Name: NF5595_low_25
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 49180703 - 49180381
Alignment:
| Q |
1 |
aggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacacagatt |
100 |
Q |
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| T |
49180703 |
aggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacacagatt |
49180604 |
T |
|
| Q |
101 |
gatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaaccatgaata |
200 |
Q |
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| T |
49180603 |
gatccatgcttgcacaggcgtatctcacaaaactcaccattttttcgcaaggattgggcatatcattttatctgtaataacatgtgaggaaccatgaata |
49180504 |
T |
|
| Q |
201 |
gtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180503 |
gtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtggcata |
49180404 |
T |
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| Q |
301 |
tagccatttttgtaagtcactgc |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
49180403 |
tagccatttttgtaagtcactgc |
49180381 |
T |
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