View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_26 (Length: 336)
Name: NF5595_low_26
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 23136572 - 23136260
Alignment:
| Q |
16 |
aatatcaaactaactattgtacttctatttatttatatgtttcagatcatcaacatctaaaatcataatcatatgtccagtcactttaggaaattgggaa |
115 |
Q |
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| T |
23136572 |
aatatcaaactaactattgtacttctatttatttatatgtttcagatcatcaacatctaaaatcataatcatatgtccagtcactttaggaaattgggaa |
23136473 |
T |
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| Q |
116 |
tattctttctaccttcactcgaatattattggtacttgcttgtgaagatagaattcatcaaccataaaatatctaccacgctttaatcacgaatcatagc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23136472 |
tattctttctaccttcactcgaatattattggtacttgcttgtgaagatagaactcatcaaccataaaatatctaccacgctttaatcacgaatcatagc |
23136373 |
T |
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| Q |
216 |
atcttatcttacctgtcaatgttgactt-----------aaatattacttcaaatctcaattttgcacgttaccaaaaagaaataaataacacatccatt |
304 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23136372 |
atcttatcttacctgtcaatgttgacttaacaagcactaaaatattacttcaaatctcaattttgcacgttaccaaaaagaaataaataacacatccatt |
23136273 |
T |
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| Q |
305 |
tcacaaccagttt |
317 |
Q |
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|||||||| |||| |
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| T |
23136272 |
tcacaaccggttt |
23136260 |
T |
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