View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_27 (Length: 333)
Name: NF5595_low_27
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 23640264 - 23640568
Alignment:
| Q |
20 |
aggaaggtggtggcttggaggaagtttgtagtgagaggtgagagcaaatacaattatttttaggtgtaaacaactatattctattaataaacttcaattt |
119 |
Q |
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| T |
23640264 |
aggaaggtggtggcttggaggaagtttgtagtgagaggtgagagcaaatataattatttttaggtgtaaacaactatattctattaataaacttcaattt |
23640363 |
T |
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| Q |
120 |
tattagcatatatgaactactatacctcataagctacaagcaaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
23640364 |
tattagcatatatgaactactatacctcataagctacaagcaaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagtctgcac |
23640463 |
T |
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| Q |
220 |
aaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640464 |
aaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcaga |
23640563 |
T |
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| Q |
320 |
attat |
324 |
Q |
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||||| |
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| T |
23640564 |
attat |
23640568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 161 - 324
Target Start/End: Original strand, 23627795 - 23627958
Alignment:
| Q |
161 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23627795 |
aaagaaccaccgtatatgtcattttttgtgatattttcaaagccctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagc |
23627894 |
T |
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| Q |
261 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
324 |
Q |
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| T |
23627895 |
aaagtgcatctcttattgattgagaattgtttgagtacatgtcacaatctacattcagaattat |
23627958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 23654354 - 23654482
Alignment:
| Q |
193 |
attttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt |
292 |
Q |
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|||||||||| |||| |||| ||| ||||| ||||||||||| || ||||||||||||||||| | || || | ||||||||| |||| ||||||||| |
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| T |
23654354 |
attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt |
23654453 |
T |
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| Q |
293 |
gagtacatgtcacaatctacattcagaat |
321 |
Q |
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| T |
23654454 |
gagtacatgtcacaatctacatttagaat |
23654482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 27185254 - 27185218
Alignment:
| Q |
20 |
aggaaggtggtggcttggaggaagtttgtagtgagag |
56 |
Q |
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|||||||||||||||||| |||||||||||| ||||| |
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| T |
27185254 |
aggaaggtggtggcttggtggaagtttgtagagagag |
27185218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 27834796 - 27834760
Alignment:
| Q |
20 |
aggaaggtggtggcttggaggaagtttgtagtgagag |
56 |
Q |
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|||||||||||||||||| |||||||||||| ||||| |
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| T |
27834796 |
aggaaggtggtggcttggtggaagtttgtagagagag |
27834760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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