View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_29 (Length: 324)
Name: NF5595_low_29
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 34560707 - 34561005
Alignment:
| Q |
19 |
ctccgtgtataaattgggtgccacctcctggaaacttgaacttatccttgtctcttctaatccaattttgaccccctttatcttccacaagacgagtgtg |
118 |
Q |
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| T |
34560707 |
ctccgtgtataaattgggtgccacctcctggaaacttgaacttattcttgtctcttctaatccaattttgaccccctttatcttccacaagacgagtgtg |
34560806 |
T |
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| Q |
119 |
gggaacattactgtacaacacctacaagaaaaaagcataatattgcattaaaaaaccaagttacagccccctacaccccagataaaaagaaattttagtg |
218 |
Q |
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| T |
34560807 |
gggaacattactgtaccacacctacaagaaaaaagcataatattgcattaaaaaaccaagttacagccacctacaccccagataaaaagaaatttgagtg |
34560906 |
T |
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| Q |
219 |
acaattgataaaattataatctgctccacttggaaaaacttaaattacacccaccaacaagatattctttttcaatttatgattttaaagatcattgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34560907 |
gcaattgataaaattataatctgctccacttggaaaaacttaaattacaccctccaacaagatattctttttagatttatgattttaaagatcattgat |
34561005 |
T |
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Back To:
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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 30882579 - 30882702
Alignment:
| Q |
21 |
ccgtgtataaattgggtgccacctcctggaaacttgaacttatccttgtctcttctaatccaattttgaccccctttatcttccacaagacgagtgtggg |
120 |
Q |
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||||||||||| || || || ||||||||||| || |||||||| |||||||| |||||| ||||| || ||||||||||| || |||||||| || | |
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| T |
30882579 |
ccgtgtataaactgtgtaccgcctcctggaaatttaaacttatctttgtctctggaaatccagttttggccacctttatcttcaactagacgagtatgag |
30882678 |
T |
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| Q |
121 |
gaacattactgtacaacacctaca |
144 |
Q |
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| T |
30882679 |
gaacattactgaaccatacctaca |
30882702 |
T |
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