View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5595_low_3 (Length: 650)

Name: NF5595_low_3
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5595_low_3
NF5595_low_3
[»] chr7 (8 HSPs)
chr7 (1-637)||(29476801-29477452)
chr7 (1-559)||(29480018-29480561)
chr7 (114-254)||(29894513-29894653)
chr7 (348-492)||(29446256-29446400)
chr7 (130-248)||(29446494-29446612)
chr7 (127-248)||(29922894-29923015)
chr7 (182-245)||(19638002-19638065)
chr7 (114-249)||(29436460-29436595)
[»] scaffold0242 (4 HSPs)
scaffold0242 (44-297)||(14504-14760)
scaffold0242 (44-297)||(23339-23595)
scaffold0242 (342-532)||(14281-14468)
scaffold0242 (342-532)||(23116-23303)
[»] chr1 (3 HSPs)
chr1 (110-245)||(4367357-4367492)
chr1 (146-245)||(4015737-4015836)
chr1 (146-242)||(10218160-10218256)


Alignment Details
Target: chr7 (Bit Score: 550; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 637
Target Start/End: Complemental strand, 29477452 - 29476801
Alignment:
Q  1 gattaggcttccttactgtccaaaccgattcatttgtatatgagacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29477452 gattaggcttccttactgtccaaaccgattcatttgtatatgagacctattttggtttcatcctcaacgccgccaccccactgcgtttccacgatcatga 29477353  T
Q  101 ctccggtgacgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29477352 ctccggtgacgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtc 29477253  T
Q  201 ttggaaatccttaatctctgatcccacctttgtgaaattacacctcaatcgatcttcaacaagaaattcactcttcacaataggcacgctgcacgtcgca 300  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29477252 ttggaaatccctaatctctgatcccagctttgtgaaattacacctcaatcgatcttcaacaagaaatccactcttcacaataggcacgctgcacatcgca 29477153  T
Q  301 gctatccccatcg---------------atgatgttgacggcgttggattggaggtgggttacagtgtcgttccttactcgttaaacggtttaattcaaa 385  Q
    |||||||||||||               |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29477152 gctatccccatcgcagctatccccatcgatgatgttgacgaccgtggattggaggtgggttacagtgtcgttccttactcgttaaactgtttaattcaaa 29477053  T
Q  386 acccgttgttcaccctttcggtcgatccttaccatcatttgggtgataaagaatgttctttaatgattggtagctgcaatggattgattcttttggctgg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29477052 acccgttgttcaccctttcggtcgatccttaccatcatttgggtgataaagaatgttctttaatgattggtagctgcaatggattgattcttttggctgg 29476953  T
Q  486 cggtgattctcaattgggatattttcgtctatggaacccagccacaatgacaatatctccaaattttgggtattttgtccgtttccacagcagtgcaacc 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  29476952 cggtgattctcaattgggatattttcgtctatggaacccagccacaatgacaatatctccaaattttgggtattttgtccgtttccatggcagtgcaacc 29476853  T
Q  586 caccctttcccgtttcttttctattacaatttcacctttggatgtgataatt 637  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  29476852 caccctttcccgtttcttggctattacaatttcacctttggatgtgataatt 29476801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 29480561 - 29480018
Alignment:
Q  1 gattaggcttccttactgtccaaaccgattcatttgtatatgagacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatga 100  Q
    ||||||||||||| ||| |||||||||  ||||||| || |||  |||||| | |||||||||||||||||  ||||||||||||| |  || ||||       
T  29480561 gattaggcttcctcactttccaaaccgtatcatttgcatctga--cctatt-atgtttcatcctcaacgccttcaccccactgcgtgt--acaatca--- 29480470  T
Q  101 ctccggtgacgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtc 200  Q
          |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||||  | |||||    
T  29480469 ------tgacgccggtggtccttcctgatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtc 29480376  T
Q  201 ttggaaatccttaatctctgatcccacctttgtgaaattacacctcaatcgatcttcaacaagaaattcactcttcacaataggcacgctgcacgtcgca 300  Q
    ||||||| || |||| ||  |||||| |||||| |||||||||||||||| ||| |||||| ||||| | ||||||||| ||| ||| |||||| |||||    
T  29480375 ttggaaaaccctaatttccaatcccaactttgtaaaattacacctcaatcaatcctcaacacgaaatcccctcttcacactagtcacactgcacttcgca 29480276  T
Q  301 gctatccc--catcgatgatgttgacggcgttggattggaggtgggttacagtgtcgttccttactcgttaaacggtttaattcaaaacccgttgttcac 398  Q
      ||||||  |||||| ||   ||||  |  |||||||||| |||||| ||||||||||||||||||||| ||| |||||||| | ||||||||||||||    
T  29480275 attatcccatcatcgaaga---tgaccaccatggattggagatgggtttcagtgtcgttccttactcgttgaacagtttaattgagaacccgttgttcac 29480179  T
Q  399 cctttcggtcgatccttaccatcatttgggtgataaagaatgttctttaatgattggtagctgcaatggattgattcttttggctggcggtgattctcaa 498  Q
    |||||| || ||||| ||| |||||||| |||||||| |||| || |  ||| ||| || |||||||||||||||||||||||||||||||||||| |||    
T  29480178 cctttccgtagatccgtactatcatttgagtgataaacaatgctcctgtatggttgatacctgcaatggattgattcttttggctggcggtgattcacaa 29480079  T
Q  499 ttgggatattttcgtctatggaacccagccacaatgacaatatctccaaattttgggtatt 559  Q
    || | |||||||| ||||||||||||||| ||||||  |||  ||||||||||||| ||||    
T  29480078 tttgaatattttcatctatggaacccagcaacaatggaaattcctccaaattttggctatt 29480018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 29894513 - 29894653
Alignment:
Q  114 ggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatcctta 213  Q
    |||||| || |||||||||||||||    || |||||||||| ||||| || | ||||||||||||| |||  ||||||||||||||||||||| || ||    
T  29894513 ggtggttctccctgacgatctcatcttcaagatactttccttacttccggttatatctcttgttcgattcacttgtgttagcaagtcttggaaaacccta 29894612  T
Q  214 atctctgatcccacctttgtgaaattacacctcaatcgatc 254  Q
    |||| |||||||||||| || ||||||||||||||| ||||    
T  29894613 atctttgatcccaccttcgtcaaattacacctcaatagatc 29894653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 348 - 492
Target Start/End: Complemental strand, 29446400 - 29446256
Alignment:
Q  348 cagtgtcgttccttactcgttaaacggtttaattcaaaacccgttgttcaccctttcggtcgatccttaccatcatttgggtgataaagaatgttcttta 447  Q
    ||||||| ||||||||||||| ||  |||||||||| ||  | |  ||||| ||||| || ||||||||| |||||||| |  || ||| ||||||||      
T  29446400 cagtgtcattccttactcgtttaatcgtttaattcagaattcatctttcactctttccgtggatccttactatcatttgagctatcaaggatgttcttct 29446301  T
Q  448 atgattggtagctgcaatggattgattcttttggctggcggtgat 492  Q
    ||  |||||| ||||||||| ||||||||||||||||||||||||    
T  29446300 atagttggtaactgcaatggtttgattcttttggctggcggtgat 29446256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 29446612 - 29446494
Alignment:
Q  130 gatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacct 229  Q
    ||||||||||| ||| |  |||||||||||||||||||||||||||||||| |||| ||||| |  |||| ||||||| ||  ||| || |||  |||||    
T  29446612 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 29446513  T
Q  230 ttgtgaaattacacctcaa 248  Q
    | || ||||||||||||||    
T  29446512 tcgtcaaattacacctcaa 29446494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 29923015 - 29922894
Alignment:
Q  127 gacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatccca 226  Q
    |||||||||||||| ||  |||||||||| ||||| || ||| ||||| ||||| ||||  ||||||| ||||||||||||    | ||||| |||||||    
T  29923015 gacgatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatctccgatccca 29922916  T
Q  227 cctttgtgaaattacacctcaa 248  Q
    | || |||||||| ||||||||    
T  29922915 cattcgtgaaattgcacctcaa 29922894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 19638065 - 19638002
Alignment:
Q  182 tcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacct 245  Q
    ||||||||||  ||||||| |||||| || | |||||||||||||| ||||| |||||||||||    
T  19638065 tcaaatgtgtctgcaagtcatggaaaaccatcatctctgatcccacttttgtcaaattacacct 19638002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 29436595 - 29436460
Alignment:
Q  114 ggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatcctta 213  Q
    |||||| || ||||||||||||||| | ||| ||||| | || |||||||| |||||  || ||| | | | |||||| ||  |||||||||||||| ||    
T  29436595 ggtggttctccctgacgatctcatcaccgagatacttccgtttcttcccgttaaatccattcttcaatttagatgtgtcagtgagtcttggaaatcccta 29436496  T
Q  214 atctctgatcccacctttgtgaaattacacctcaat 249  Q
    |  ||  ||||| | |||||||||||||||||||||    
T  29436495 acttccaatccctcttttgtgaaattacacctcaat 29436460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 14760 - 14504
Alignment:
Q  44 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatctcatcgcaga 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  14760 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcaga 14661  T
Q  144 gttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacac 243  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  14660 gttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacac 14561  T
Q  244 ctcaatcg---atcttcaacaagaaattcactcttcacaataggcacgctgcacgtc 297  Q
    ||||||||   ||| |||||| ||||| ||||||||||| ||| ||  |||||||||    
T  14560 ctcaatcgatcatcgtcaacacgaaatccactcttcacactagtcattctgcacgtc 14504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 44 - 297
Target Start/End: Complemental strand, 23595 - 23339
Alignment:
Q  44 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtggtccttcctgacgatctcatcgcaga 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||    
T  23595 gacctatttaggtttcatcctcaacgccgccaccccactgcgtttccacgatcatgactccggtgacgccggtgttccttccgggcgatctcatcgcaga 23496  T
Q  144 gttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacac 243  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  23495 gttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccacttttgtgaaattacac 23396  T
Q  244 ctcaatcg---atcttcaacaagaaattcactcttcacaataggcacgctgcacgtc 297  Q
    ||||||||   ||| |||||| ||||| ||||||||||| ||| ||  |||||||||    
T  23395 ctcaatcgatcatcgtcaacacgaaatccactcttcacactagtcattctgcacgtc 23339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 342 - 532
Target Start/End: Complemental strand, 14468 - 14281
Alignment:
Q  342 gggttacagtgtcgttccttactcgttaaacggtttaattcaaaacccgttgttcaccctttcggtcgatccttaccatcatttgggtgataaagaatgt 441  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||| |||||||| ||| ||| ||||   | || | || |     
T  14468 gggtaacagtgtcgttccttactcgttaaaccgtttaattcaaaacccatcattcaccctttctgtcgatccgtactatcgtttgaccggtagacaaagc 14369  T
Q  442 tctttaatgattggtagctgcaatggattgattcttttggctggcggtgattctcaattgggatattttcgtctatggaacccagccacaa 532  Q
    ||||  || || |||| ||||||||| ||||||||||||  |||||||||   || ||  ||||||||||| |||||||||||| ||||||    
T  14368 tcttatataatcggtacctgcaatggtttgattcttttgattggcggtga---tctatatggatattttcggctatggaacccaaccacaa 14281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 342 - 532
Target Start/End: Complemental strand, 23303 - 23116
Alignment:
Q  342 gggttacagtgtcgttccttactcgttaaacggtttaattcaaaacccgttgttcaccctttcggtcgatccttaccatcatttgggtgataaagaatgt 441  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||| |||||||| ||| ||| ||||   | || | || |     
T  23303 gggtaacagtgtcgttccttactcgttaaaccgtttaattcaaaacccatcattcaccctttctgtcgatccgtactatcgtttgaccggtagacaaagc 23204  T
Q  442 tctttaatgattggtagctgcaatggattgattcttttggctggcggtgattctcaattgggatattttcgtctatggaacccagccacaa 532  Q
    ||||  || || |||| ||||||||| ||||||||||||  |||||||||   || ||  ||||||||||| |||||||||||| ||||||    
T  23203 tcttatataatcggtacctgcaatggtttgattcttttgattggcggtga---tctatatggatattttcggctatggaacccaaccacaa 23116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 4367492 - 4367357
Alignment:
Q  110 cgccggtggtccttcctgacgatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatc 209  Q
    |||||||||||||  |||| |||||||| || ||| ||||||| || || ||||| |||| |||| ||||| |||  ||||| || ||||||||||||      
T  4367492 cgccggtggtcctctctgatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaaa 4367393  T
Q  210 cttaatctctgatcccacctttgtgaaattacacct 245  Q
    | | |||||||||||| ||||||||||| |||||||    
T  4367392 cctcatctctgatcccgcctttgtgaaactacacct 4367357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 4015836 - 4015737
Alignment:
Q  146 tactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattacacct 245  Q
    ||||||| || ||||| || | ||||||||||||| |||  ||||| || |||||||||||| || |||| || ||| |||||||||||||||| |||||    
T  4015836 tactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaatttccgattccacctttgtgaaattgcacct 4015737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 10218160 - 10218256
Alignment:
Q  146 tactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccttaatctctgatcccacctttgtgaaattaca 242  Q
    |||||||||| ||||| || |||||||||||| |  |||  ||||| || || ||||||||| || |||| ||||| ||||| ||||||||||||||    
T  10218160 tactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaaccctaatttctgaacccacttttgtgaaattaca 10218256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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