View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_31 (Length: 315)
Name: NF5595_low_31
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 40326036 - 40325742
Alignment:
| Q |
5 |
acatcatccaagatcacaagaatttggtgatccatatttgctaatgtcaagtatatttttcttgttcttccagcttcagtatttacgtcgaattccagat |
104 |
Q |
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| T |
40326036 |
acatcatccaagatcacaagaatttggcgatccatatttgctaatgtcaagtatatttttcttgttcttccagcttcagtatttacgtcgaattccagat |
40325937 |
T |
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| Q |
105 |
tcaacacgttagcaatttcatcttgaatcctttttatgtttgggttttgggacacattgataaataaaactacatcaaaaaactttgagtacttggcttt |
204 |
Q |
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| T |
40325936 |
tcaactcgttagcaatttcatcttgaatcctttttatgtttgggttttgggacacattgataaataaaacttcatcaaaaaacttggagtacttggcttt |
40325837 |
T |
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| Q |
205 |
ctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaa |
299 |
Q |
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| T |
40325836 |
ctcagccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgcagtgcctgcaaaa |
40325742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 40310756 - 40310491
Alignment:
| Q |
5 |
acatcatccaagatcacaagaatttggtgatccatatttgctaatgtcaagtatatttttcttgttcttccagcttcagtatttacgtcgaattccagat |
104 |
Q |
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| T |
40310756 |
acatcatccaagatcacaagaattggacgatctgtgctttctaatgtcaagtataattctctagctcttccaacttcagtgtttttgtcaaatttgagat |
40310657 |
T |
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| Q |
105 |
tcaacacgttagcaatttcatcttgaatcctttttatgtttgggttttgggacacattgataaataaaactacatcaaaaaactttgagtacttggcttt |
204 |
Q |
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| T |
40310656 |
ccaaaaagtcagctatttcatcttgaatctgttttacatttggattttgagacacagtgataaataaaactgcagcaaaaaccctcaggtacctggcttt |
40310557 |
T |
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| Q |
205 |
ctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttata |
270 |
Q |
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| T |
40310556 |
ctcagccactgctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttata |
40310491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 40257605 - 40257696
Alignment:
| Q |
179 |
tcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttata |
270 |
Q |
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| T |
40257605 |
tcaaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatata |
40257696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 40277348 - 40277251
Alignment:
| Q |
143 |
tttgggttttgggacacattgataaataaaactacatcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccaga |
240 |
Q |
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| T |
40277348 |
tttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccaga |
40277251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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