View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5595_low_4 (Length: 576)
Name: NF5595_low_4
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 9 - 558
Target Start/End: Complemental strand, 39999530 - 39998981
Alignment:
| Q |
9 |
agcagagacatgctgtagggttttttccataataatgtcattggcccgagggcaggaatgctggtagaagttcttcctcaggatgcctccttgacaagtc |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
39999530 |
agcagagacatactgtagggttttttccataataatgtcattggcctgagggcaggaatgctggtagaagttcttccccaggatgcctccttgacaaatc |
39999431 |
T |
|
| Q |
109 |
acaacgaaacttaaaagaaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39999430 |
acaacgaaacttaaaagtaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta |
39999331 |
T |
|
| Q |
209 |
tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaaggttagtttcaaattatgtcctaaacttttttatcag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39999330 |
tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaagattagtttcaaattatgtcctaaacttttttatcag |
39999231 |
T |
|
| Q |
309 |
taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgccctactatttttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39999230 |
taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgtcctactatttttt |
39999131 |
T |
|
| Q |
409 |
cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39999130 |
cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata |
39999031 |
T |
|
| Q |
509 |
aatttaggatgaggggaagatgcaccagtataaggtaggaaagacctttg |
558 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39999030 |
aatttaggatgaggggacgatgcaccagtataaggtaggaaagacctttg |
39998981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University