View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_41 (Length: 269)
Name: NF5595_low_41
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 49627054 - 49627283
Alignment:
| Q |
23 |
cacagaacccgctacattcatcaccccgtataaaggccagaatctacatattgtttttgacacttaaattggaagacattgtcttttctcctttttaatt |
122 |
Q |
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| T |
49627054 |
cacagaacccgctacattcatcaccccgtataaaggccagaatctacatattgtttttgacacttaaattggaagacattgtcttttctcctttttaatt |
49627153 |
T |
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| Q |
123 |
ttgttgtttgtaacaaaggaatatgacaaaaattccnnnnnnnnnngaaggaatgacaaaaattcttttaaatagtcttatgcgagaattgatccaacat |
222 |
Q |
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| T |
49627154 |
ttgttgtttgtaacaaaggaatatgacaaaaattccttttttttttgaaggaatgacaaaaattcttttaaatagtcttatgcgagaattgatccaacat |
49627253 |
T |
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| Q |
223 |
tctttatgttcaatactttaatcataaaat |
252 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49627254 |
tctttatgttcaatactttaatcataaaat |
49627283 |
T |
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