View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_42 (Length: 259)
Name: NF5595_low_42
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_42 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2622 - 2395
Alignment:
| Q |
10 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
2622 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcac |
2523 |
T |
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| Q |
110 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacagaaggcagc |
209 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
2522 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgcccctaacagaaggcagc |
2423 |
T |
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| Q |
210 |
acccaccaaaacagcaaacagaacctgc |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2422 |
acccaccaaaacagcaaacagaacctgc |
2395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 9224 - 8997
Alignment:
| Q |
10 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
9224 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcccccaagcac |
9125 |
T |
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| Q |
110 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacagaaggcagc |
209 |
Q |
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| T |
9124 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgcccctaacagaaggcagc |
9025 |
T |
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| Q |
210 |
acccaccaaaacagcaaacagaacctgc |
237 |
Q |
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| T |
9024 |
acccaccaaaacagcaaacagaacctgc |
8997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 17060646 - 17060419
Alignment:
| Q |
10 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
109 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||||||| ||||| |||||| ||| ||||| ||| |
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| T |
17060646 |
gcaaaggtatacaaagacccaaaa-ctatccggaaaggcagccagacaagaacaatgaccccctatgcataacaccgcaccaaaccaagcccccaaccac |
17060548 |
T |
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| Q |
110 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccg-cctctgacagaaggcag |
208 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || || ||||||||||| |
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| T |
17060547 |
accaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcaggtgcacacagcagcagccgccccctaacagaaggcag |
17060448 |
T |
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| Q |
209 |
cacccaccaaaacagcaaacagaacctgc |
237 |
Q |
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| T |
17060447 |
cacccaccaaaacagcaaacagaacctgc |
17060419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 48224114 - 48223879
Alignment:
| Q |
10 |
gcaaaggtatacaaagacccaaaaactatctggaaaggcaaccatacaagaacaatgaccccctacgcataacgccgcatcaaacccagcacccaagcac |
109 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
48224114 |
gcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctacgcataacgccgcaccaaacccagcccccaagcac |
48224015 |
T |
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| Q |
110 |
accaacacatgctgaaccgcaccacagaagctgctggcagcagc--------aaacaccgactgacagcaggtgcacacagcagcaaccgcctctgacag |
201 |
Q |
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|||||||| ||||||||||||||||||||||||||| || || | ||||||| ||||||||||||||||| ||||||| ||||| | |||| |
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| T |
48224014 |
accaacacgtgctgaaccgcaccacagaagctgctgacaacaacaacaaaaaaaacaccagctgacagcaggtgcacatagcagcagccgcccttaacag |
48223915 |
T |
|
| Q |
202 |
aaggcagcacccaccaaaacagcaaacagaacctgc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48223914 |
aaggcagcacccaccaaaacagcaaacagaacctgc |
48223879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 36428032 - 36427944
Alignment:
| Q |
67 |
accccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacagaagctgctggcagcagcaa |
155 |
Q |
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|||||||||||||| | |||||||||||||| | ||||| |||||||| || | || ||||| ||||| |||||||||||||||||| |
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| T |
36428032 |
accccctacgcataccaccgcatcaaacccaacccccaaacacaccaaagcacacagacccgcaacacagcagctgctggcagcagcaa |
36427944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 49571555 - 49571424
Alignment:
| Q |
63 |
aatgaccccctacgcataacgccgcatcaaacccagcacccaagcacaccaacacatgctgaaccgcaccacaga-agctgctggcagcagcaaacaccg |
161 |
Q |
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|||| ||||||||||||| || |||||||| ||||| ||| ||||| ||| | || ||||||| ||||||| ||||||||||||| || |||||| |
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| T |
49571555 |
aatggccccctacgcatacagctgcatcaaaaccagcccccttgcacaacaaaccgcgcagaaccgcgccacagatagctgctggcagctgctaacacca |
49571456 |
T |
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| Q |
162 |
actgacagcaggtgcacacagcagcaaccgcc |
193 |
Q |
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|||||||||||| ||| | |||| |||||||| |
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| T |
49571455 |
actgacagcaggagcaaatagcaccaaccgcc |
49571424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 36616105 - 36616151
Alignment:
| Q |
71 |
cctacgcataacgccgcatcaaacccagcacccaagcacaccaacac |
117 |
Q |
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| T |
36616105 |
cctacgcataccgccgcatcaaccccagcccccaagcacaccaacac |
36616151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 5357188 - 5357132
Alignment:
| Q |
137 |
aagctgctggcagcagcaaacaccgactgacagcaggtgcacacagcagcaaccgcc |
193 |
Q |
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|||||||||||||| || |||||| |||||||||||| ||| | |||| |||||||| |
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| T |
5357188 |
aagctgctggcagctgctaacaccaactgacagcaggagcaaatagcaccaaccgcc |
5357132 |
T |
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