View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_55 (Length: 218)
Name: NF5595_low_55
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_55 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 596217 - 596000
Alignment:
| Q |
1 |
tggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggctgtt |
100 |
Q |
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| T |
596217 |
tggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcgattggaaaataaacttaaatggaggctgtt |
596118 |
T |
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| Q |
101 |
tgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgtataacattttcattg |
200 |
Q |
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| T |
596117 |
tgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggttgcataaaacacttcaaaatggctgcaagggaatggtgtataacattttcattg |
596018 |
T |
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| Q |
201 |
tgatcctcttttcaacaa |
218 |
Q |
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| T |
596017 |
tgatcctcttttcaacaa |
596000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 17373815 - 17373597
Alignment:
| Q |
1 |
tggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggctgtt |
100 |
Q |
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| T |
17373815 |
tggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggatgtt |
17373716 |
T |
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| Q |
101 |
tgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgta---taacattttca |
197 |
Q |
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| T |
17373715 |
tgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgtatagtaacattttca |
17373616 |
T |
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| Q |
198 |
ttgtgatcctcttttcaac |
216 |
Q |
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| T |
17373615 |
ttgtgatcctcttttcaac |
17373597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 6608801 - 6608887
Alignment:
| Q |
78 |
aataaacttaaatggaggctgtttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaa |
164 |
Q |
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| T |
6608801 |
aataaacgtaaatggaggctgtttgaacgatcaaaagtgtgttccttggaaaagtatccaattaatggatgcgtacaacacttcaaa |
6608887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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