View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5595_low_7 (Length: 518)
Name: NF5595_low_7
Description: NF5595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5595_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 55181499 - 55180997
Alignment:
| Q |
19 |
tttaatagtgtacttttataatgattaaacattacataaggtaaaaaataagtatagattgcgttgttaaaaatacataac----------------aga |
102 |
Q |
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| T |
55181499 |
tttaatagtgtacttttataatgattaaacattacataaggtaaaaaataagtatagattgcgttgttaaaaatacataaattgttggattaataaaaga |
55181400 |
T |
|
| Q |
103 |
aaaataagtcttgtgtttataactcgcagatcatgctcacgctcttgtcggagtaatcacgttatcatctagttccaccacttattttgatatatcttct |
202 |
Q |
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|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55181399 |
aaaataagtcttgtgtttataactcgtaaatcatacgcacgctcttgtcggagtaatcacgttatcatctagttccaccacttattttgatatatcttct |
55181300 |
T |
|
| Q |
203 |
tgttttgatactcttattattaataaaatgctataaatannnnnnnaaagcgctcaacataagcaataaacaattaatatgtagacaaagagaaaattag |
302 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55181299 |
tgtcttgatactcttattattaataaaatgctataaatatttttttaaagcgctcaacataagcaataaacaattaatatgtagacaaagagaaaattag |
55181200 |
T |
|
| Q |
303 |
taaatgaataactagtaaattataaatagtttgatcaacataaataatttaattaaatcttgaccaannnnnnnnnnnnnnnnnaattaaatgagtagta |
402 |
Q |
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| T |
55181199 |
taaatgaataactagtaaattataaatagtttgatcaacataaataatttaattaaatcttgaccaa-------ttttttttttaattaaatgagtagta |
55181107 |
T |
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| Q |
403 |
tttttcaagggccttccaaaaattataagtaaatcaacctacctctgctcacnnnnnnnagttgaaatttctcttcctagtttttacatttgccacttta |
502 |
Q |
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| T |
55181106 |
tttttcaagggccttccaaaaattataagtaaaccaacctacctctgctgactttttttagttgaaatttctcttcctagtttttacatttgccacttta |
55181007 |
T |
|
| Q |
503 |
tattcttcga |
512 |
Q |
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| |||||||| |
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| T |
55181006 |
ttttcttcga |
55180997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 24510621 - 24510681
Alignment:
| Q |
178 |
caccacttattttgatatatcttcttgttttgatactcttattattaataaaatgctataa |
238 |
Q |
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| T |
24510621 |
caccacttattttgatattccctcttgtattgatactcttatttttaatgaaatactataa |
24510681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 32822714 - 32822654
Alignment:
| Q |
160 |
cacgttatcatctagttccaccacttattttgatatatcttcttgttttgatactcttatt |
220 |
Q |
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| T |
32822714 |
cacgttatcaggtagtcccaccacttattttgatataccctcttgtattgatactcttatt |
32822654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 40504896 - 40504822
Alignment:
| Q |
164 |
ttatcatctagttccaccacttattttgatatatcttcttgttttgatactcttattattaataaaatgctataa |
238 |
Q |
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|||||| |||||||||||||||||||| | || | || ||| ||||||||||| |||||||| ||||| ||||| |
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| T |
40504896 |
ttatcaactagttccaccacttattttaaaatgacctcctgtattgatactcttgttattaatgaaatgatataa |
40504822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 16467495 - 16467435
Alignment:
| Q |
178 |
caccacttattttgatatatcttcttgttttgatactcttattattaataaaatgctataaa |
239 |
Q |
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||||||||||||||||||| || ||||| || |||||||||||||||| |||||| ||||| |
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| T |
16467495 |
caccacttattttgatatacct-cttgtattattactcttattattaatgaaatgccataaa |
16467435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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