View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5596_high_1 (Length: 473)

Name: NF5596_high_1
Description: NF5596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5596_high_1
NF5596_high_1
[»] chr7 (36 HSPs)
chr7 (149-473)||(29630832-29631156)
chr7 (345-473)||(29650062-29650186)
chr7 (148-338)||(4888389-4888579)
chr7 (187-341)||(25084730-25084884)
chr7 (141-230)||(47270580-47270668)
chr7 (148-332)||(9559017-9559201)
chr7 (148-341)||(21151071-21151264)
chr7 (152-331)||(7362497-7362676)
chr7 (143-256)||(40023215-40023327)
chr7 (179-235)||(29844316-29844372)
chr7 (141-256)||(39855770-39855884)
chr7 (187-256)||(12139330-12139400)
chr7 (183-256)||(32915960-32916033)
chr7 (140-256)||(33450510-33450627)
chr7 (183-256)||(47799898-47799971)
chr7 (149-241)||(989148-989239)
chr7 (148-256)||(7712331-7712438)
chr7 (148-256)||(44647966-44648076)
chr7 (141-255)||(7373872-7373985)
chr7 (148-331)||(16366447-16366630)
chr7 (139-332)||(47500236-47500430)
chr7 (187-332)||(45260429-45260574)
chr7 (183-256)||(8149613-8149686)
chr7 (185-242)||(24193611-24193668)
chr7 (148-216)||(5463867-5463934)
chr7 (276-343)||(6882149-6882216)
chr7 (281-344)||(8607957-8608020)
chr7 (276-339)||(32915880-32915943)
chr7 (271-332)||(34986033-34986092)
chr7 (137-203)||(44390835-44390900)
chr7 (170-227)||(18064588-18064643)
chr7 (139-256)||(18198260-18198377)
chr7 (276-317)||(19889115-19889156)
chr7 (183-256)||(30588539-30588612)
chr7 (185-242)||(46802331-46802388)
chr7 (276-316)||(30588489-30588529)
[»] chr3 (34 HSPs)
chr3 (7-153)||(34897794-34897940)
chr3 (131-256)||(1995448-1995573)
chr3 (142-216)||(52859272-52859346)
chr3 (272-343)||(550903-550974)
chr3 (148-331)||(43719910-43720093)
chr3 (148-317)||(27033594-27033763)
chr3 (187-341)||(2229902-2230056)
chr3 (148-256)||(19830394-19830502)
chr3 (187-341)||(34373750-34373904)
chr3 (146-236)||(10474400-10474489)
chr3 (141-332)||(48084747-48084939)
chr3 (148-256)||(29586340-29586447)
chr3 (149-241)||(44637961-44638052)
chr3 (148-242)||(24754675-24754769)
chr3 (148-242)||(24763672-24763766)
chr3 (183-233)||(33632849-33632899)
chr3 (275-341)||(40851692-40851758)
chr3 (182-256)||(54911658-54911732)
chr3 (275-340)||(52859471-52859536)
chr3 (193-331)||(34373593-34373731)
chr3 (148-236)||(51982549-51982636)
chr3 (146-215)||(30235416-30235484)
chr3 (183-256)||(31523666-31523739)
chr3 (276-340)||(3009169-3009233)
chr3 (153-241)||(47750274-47750361)
chr3 (275-341)||(19830522-19830589)
chr3 (276-327)||(49289042-49289093)
chr3 (191-233)||(25285843-25285885)
chr3 (187-237)||(46167416-46167466)
chr3 (275-332)||(12402893-12402950)
chr3 (276-317)||(31523749-31523790)
chr3 (148-241)||(40851793-40851886)
chr3 (183-256)||(42613084-42613157)
chr3 (183-256)||(49679268-49679341)
[»] chr6 (24 HSPs)
chr6 (140-256)||(7215807-7215923)
chr6 (140-256)||(2800566-2800682)
chr6 (139-341)||(4804367-4804569)
chr6 (148-317)||(7162027-7162196)
chr6 (148-313)||(21159332-21159497)
chr6 (148-242)||(17828532-17828625)
chr6 (190-256)||(27826542-27826608)
chr6 (187-341)||(1249150-1249302)
chr6 (148-256)||(17944166-17944274)
chr6 (207-341)||(29698082-29698216)
chr6 (150-242)||(23936271-23936365)
chr6 (271-341)||(32737793-32737863)
chr6 (187-256)||(12412641-12412710)
chr6 (187-256)||(13089751-13089820)
chr6 (183-256)||(24484883-24484956)
chr6 (148-242)||(227526-227621)
chr6 (141-183)||(9952993-9953035)
chr6 (276-338)||(27826460-27826522)
chr6 (185-256)||(32254031-32254102)
chr6 (191-229)||(9954332-9954370)
chr6 (183-256)||(13888520-13888594)
chr6 (275-321)||(30460759-30460805)
chr6 (183-256)||(2142291-2142364)
chr6 (149-205)||(29229149-29229204)
[»] chr1 (32 HSPs)
chr1 (140-256)||(39426214-39426330)
chr1 (139-256)||(32887735-32887851)
chr1 (142-228)||(35534741-35534825)
chr1 (144-256)||(26860010-26860121)
chr1 (148-256)||(26372256-26372362)
chr1 (187-341)||(12151686-12151840)
chr1 (148-332)||(50294026-50294210)
chr1 (148-341)||(50484305-50484498)
chr1 (183-256)||(5047379-5047452)
chr1 (148-256)||(32618805-32618911)
chr1 (187-242)||(7840681-7840736)
chr1 (275-341)||(12381000-12381066)
chr1 (275-341)||(12385067-12385133)
chr1 (275-341)||(45977941-45978007)
chr1 (271-332)||(40988643-40988704)
chr1 (141-256)||(18976260-18976376)
chr1 (182-252)||(24977248-24977318)
chr1 (275-341)||(48327244-48327310)
chr1 (183-256)||(30077642-30077715)
chr1 (137-256)||(5854799-5854917)
chr1 (275-341)||(7841800-7841866)
chr1 (194-256)||(24413291-24413353)
chr1 (187-241)||(48327156-48327210)
chr1 (149-203)||(49384627-49384680)
chr1 (275-332)||(23862046-23862103)
chr1 (183-256)||(52280037-52280110)
chr1 (141-205)||(1228496-1228560)
chr1 (275-343)||(1609628-1609696)
chr1 (139-215)||(12380831-12380907)
chr1 (139-215)||(12384898-12384974)
chr1 (140-240)||(27982072-27982171)
chr1 (148-224)||(45978041-45978117)
[»] chr2 (36 HSPs)
chr2 (142-255)||(30709115-30709228)
chr2 (141-256)||(4446852-4446967)
chr2 (139-256)||(19908784-19908899)
chr2 (141-216)||(30217517-30217592)
chr2 (148-338)||(13238603-13238793)
chr2 (140-256)||(31618724-31618838)
chr2 (148-341)||(35316744-35316937)
chr2 (191-338)||(28564813-28564961)
chr2 (165-256)||(15709772-15709862)
chr2 (140-210)||(30721564-30721632)
chr2 (165-256)||(36929720-36929810)
chr2 (144-256)||(30857638-30857749)
chr2 (141-215)||(2063399-2063472)
chr2 (183-256)||(8988859-8988932)
chr2 (182-255)||(34512022-34512095)
chr2 (183-256)||(35315286-35315359)
chr2 (183-256)||(38397085-38397158)
chr2 (275-332)||(39465703-39465760)
chr2 (184-256)||(21454494-21454565)
chr2 (277-341)||(41983431-41983495)
chr2 (148-214)||(22061433-22061498)
chr2 (183-256)||(374997-375070)
chr2 (187-256)||(23259489-23259558)
chr2 (141-241)||(35315521-35315620)
chr2 (165-255)||(15722239-15722328)
chr2 (276-317)||(374946-374987)
chr2 (275-344)||(2061293-2061362)
chr2 (142-191)||(6946335-6946384)
chr2 (276-317)||(8988809-8988850)
chr2 (275-344)||(12949386-12949455)
chr2 (183-252)||(19905889-19905958)
chr2 (183-256)||(23459844-23459917)
chr2 (276-317)||(29188606-29188647)
chr2 (276-344)||(157350-157417)
chr2 (275-343)||(374528-374596)
chr2 (273-341)||(10877621-10877688)
[»] chr4 (46 HSPs)
chr4 (148-341)||(19901881-19902074)
chr4 (148-341)||(23610561-23610754)
chr4 (139-341)||(56558198-56558400)
chr4 (182-331)||(5763159-5763308)
chr4 (148-256)||(5416429-5416536)
chr4 (143-239)||(36532646-36532741)
chr4 (140-211)||(15178628-15178699)
chr4 (145-256)||(42844148-42844258)
chr4 (148-332)||(34778349-34778533)
chr4 (144-256)||(1871281-1871392)
chr4 (148-322)||(3952133-3952307)
chr4 (141-256)||(56453777-56453891)
chr4 (149-235)||(5815267-5815350)
chr4 (146-256)||(13493276-13493387)
chr4 (187-256)||(24073620-24073689)
chr4 (275-340)||(38079810-38079875)
chr4 (183-256)||(48914516-48914589)
chr4 (183-256)||(56269074-56269147)
chr4 (148-341)||(18207003-18207196)
chr4 (275-341)||(12153090-12153156)
chr4 (281-343)||(25442271-25442333)
chr4 (275-341)||(33247218-33247284)
chr4 (271-332)||(12312589-12312650)
chr4 (183-256)||(23474115-23474188)
chr4 (146-211)||(33841766-33841830)
chr4 (143-242)||(47922324-47922424)
chr4 (275-341)||(12241498-12241564)
chr4 (275-341)||(52018702-52018768)
chr4 (183-256)||(5524451-5524524)
chr4 (191-256)||(30567905-30567970)
chr4 (183-256)||(36688186-36688259)
chr4 (183-256)||(50483554-50483627)
chr4 (148-256)||(33247093-33247201)
chr4 (272-332)||(33262639-33262699)
chr4 (148-256)||(39862521-39862629)
chr4 (275-330)||(17080730-17080785)
chr4 (275-338)||(24073539-24073602)
chr4 (190-256)||(33262557-33262623)
chr4 (183-256)||(1015852-1015925)
chr4 (275-332)||(5416557-5416614)
chr4 (182-219)||(5817976-5818013)
chr4 (148-256)||(12312438-12312547)
chr4 (154-239)||(36003216-36003300)
chr4 (276-317)||(37002332-37002373)
chr4 (276-317)||(56269158-56269199)
chr4 (220-256)||(46804635-46804671)
[»] chr8 (24 HSPs)
chr8 (142-256)||(42761717-42761831)
chr8 (148-338)||(28069641-28069831)
chr8 (187-341)||(30426671-30426825)
chr8 (139-237)||(21360299-21360400)
chr8 (148-341)||(36991275-36991468)
chr8 (146-256)||(42338008-42338117)
chr8 (165-256)||(18689495-18689585)
chr8 (165-256)||(24557162-24557252)
chr8 (271-341)||(5033025-5033095)
chr8 (183-256)||(26749546-26749619)
chr8 (148-256)||(6014198-6014307)
chr8 (183-239)||(17520403-17520459)
chr8 (185-256)||(36748492-36748562)
chr8 (141-332)||(45113198-45113390)
chr8 (275-332)||(8412182-8412239)
chr8 (192-256)||(10672519-10672583)
chr8 (272-331)||(28318989-28319048)
chr8 (138-229)||(37966397-37966487)
chr8 (137-203)||(20169125-20169190)
chr8 (275-341)||(41511181-41511247)
chr8 (276-321)||(28584581-28584626)
chr8 (187-236)||(40695249-40695298)
chr8 (275-343)||(27490096-27490164)
chr8 (184-256)||(34612568-34612640)
[»] chr5 (28 HSPs)
chr5 (148-256)||(29340999-29341106)
chr5 (148-341)||(32129580-32129773)
chr5 (148-341)||(35660572-35660765)
chr5 (149-317)||(4895699-4895867)
chr5 (148-341)||(11775711-11775905)
chr5 (148-338)||(18625384-18625574)
chr5 (148-341)||(37266650-37266843)
chr5 (150-340)||(39902335-39902525)
chr5 (148-255)||(43309113-43309220)
chr5 (187-256)||(14349807-14349876)
chr5 (148-341)||(13032038-13032230)
chr5 (183-256)||(31653039-31653112)
chr5 (187-256)||(40753164-40753233)
chr5 (165-256)||(34827196-34827287)
chr5 (146-212)||(9460597-9460662)
chr5 (281-343)||(10173865-10173927)
chr5 (183-240)||(10362012-10362069)
chr5 (183-236)||(18653385-18653438)
chr5 (183-256)||(36290606-36290679)
chr5 (184-256)||(2984389-2984461)
chr5 (281-316)||(11704214-11704249)
chr5 (276-343)||(43405553-43405620)
chr5 (285-343)||(4348120-4348178)
chr5 (191-237)||(14688597-14688643)
chr5 (141-175)||(21213953-21213987)
chr5 (183-253)||(27428879-27428949)
chr5 (183-256)||(3057152-3057225)
chr5 (184-241)||(31279933-31279990)
[»] scaffold0012 (1 HSPs)
scaffold0012 (148-341)||(207982-208175)
[»] scaffold0062 (2 HSPs)
scaffold0062 (165-256)||(58684-58774)
scaffold0062 (165-255)||(70796-70885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (187-256)||(7151-7220)
[»] scaffold0121 (1 HSPs)
scaffold0121 (183-256)||(29567-29640)
[»] scaffold0035 (1 HSPs)
scaffold0035 (187-256)||(16399-16468)
[»] scaffold0008 (2 HSPs)
scaffold0008 (187-256)||(9203-9272)
scaffold0008 (275-343)||(9288-9356)
[»] scaffold0171 (1 HSPs)
scaffold0171 (190-256)||(17311-17377)
[»] scaffold0006 (1 HSPs)
scaffold0006 (275-332)||(73930-73987)
[»] scaffold0456 (1 HSPs)
scaffold0456 (275-315)||(13641-13681)
[»] scaffold0126 (1 HSPs)
scaffold0126 (275-331)||(22532-22588)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 149 - 473
Target Start/End: Complemental strand, 29631156 - 29630832
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatc 248  Q
    ||||||| |||||| ||||||||||||| ||   ||||||| |||||  |||||||| || ||||||| ||||||| |||| || || |||||| |||||    
T  29631156 atcctctccatttggtaaaataaatgga-gtttgcaatttgaagaga--tagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatc 29631060  T
Q  249 attaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactcgctta 348  Q
    ||||||||              |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||    
T  29631059 attaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaatggagaaagacatgaatggagaggatcttaactcgctta 29630960  T
Q  349 ttctttggttgaattacttgagaacttacct---gatggatcaatttggttgcgtgtattattggaattcataccctgtttcttggaattgaaacaaagt 445  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29630959 ttctttggttgaattacttgagaacttacctgatgatggatcaatttggttgcgtgtattattggaattcataccctgttttttggaattgaaacaaagt 29630860  T
Q  446 acatgcactgtatgttttgagtgtgttt 473  Q
    ||||||||||| ||||||||||||||||    
T  29630859 acatgcactgtttgttttgagtgtgttt 29630832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 345 - 473
Target Start/End: Complemental strand, 29650186 - 29650062
Alignment:
Q  345 cttattctttggttgaattacttgagaacttacctgatggatcaatttggttgcgtgtattattggaattcataccctgtttcttggaattgaaacaaag 444  Q
    |||| |||||||||||||| ||| || |||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||   || ||||||||||||||    
T  29650186 cttactctttggttgaattgcttaagcacttacgtgatggatcaatttggtagcgtgtattgttggaattcatacactgt---tttgaattgaaacaaag 29650090  T
Q  445 tacatgcactgtatgttttgagtgtgttt 473  Q
    |||||||||||| || |||||||||||||    
T  29650089 tacatgcactgtttg-tttgagtgtgttt 29650062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 338
Target Start/End: Complemental strand, 4888579 - 4888389
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||| | ||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccat 4888480  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||               || ||||||||||||||||| ||||||||||||| |||| |||||| |||| |||| |||| |||||    
T  4888479 cattaattatattttatgttttttaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacataaatgaagaggatctt 4888389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 25084730 - 25084884
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||              ||||||||||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttttcaaaattttatgtgtc 25084829  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| ||| |||||  |||||||||||||| |||| ||||||||| ||| ||||    
T  25084830 tttatctcttcaaattaaaaaaatggagaaacacataaatggagaggatcataac 25084884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 47270668 - 47270580
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 230  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| || ||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataataggccctaccat 47270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 9559017 - 9559201
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||| | ||    
T  9559017 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 9559116  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||||||              ||| ||||||||||||||||| ||||||||||||| |||| |||||| | || |||||||||    
T  9559117 cattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaatggagag 9559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 21151264 - 21151071
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||   || |||||||| |||||||||||| | ||    
T  21151264 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccat 21151165  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  21151164 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagaatcctaac 21151071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 152 - 331
Target Start/End: Complemental strand, 7362676 - 7362497
Alignment:
Q  152 ctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcatt 251  Q
    |||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| ||| ||||| || | ||||||    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcatt 7362577  T
Q  252 aattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    |||||              ||| ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||    
T  7362576 aattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 7362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 40023215 - 40023327
Alignment:
Q  143 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    ||||| |||||||  |||||| ||||||||  || ||| |||||||||||| ||||||||| ||||||||| |||||| || ||||||||||||||||||    
T  40023215 gttagaatcctctctatttgaaaaaataaaacga-gtatacaatttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggtccc 40023313  T
Q  243 tctatcattaatta 256  Q
     | | |||||||||    
T  40023314 accaccattaatta 40023327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 29844372 - 29844316
Alignment:
Q  179 tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  29844372 tacacaatttggagagagatagacacataaaatagatagtgggttctaccactaagt 29844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 39855770 - 39855884
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 240  Q
    |||||| ||| |||||||||||| ||| |||||||| ||    ||||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||    
T  39855770 gggttaagattctcttcatttgacaaattaaatgga-gtttgtaatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtc 39855868  T
Q  241 cctctatcattaatta 256  Q
    ||   |||||||||||    
T  39855869 ccatcatcattaatta 39855884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 12139400 - 12139330
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagt-gggtccctctatcattaatta 256  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||| ||||||| | |||||||||||    
T  12139400 ttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaatta 12139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 32916033 - 32915960
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| ||||| | ||||| |||||    
T  32916033 caatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaatta 32915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 33450627 - 33450510
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtggg 238  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||||||| |||| ||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtggg 33450528  T
Q  239 tccctctatcattaatta 256  Q
    ||||   |||||||||||    
T  33450527 tcccatcatcattaatta 33450510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 47799898 - 47799971
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||| | |||||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaatta 47799971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 989239 - 989148
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||| ||||||| ||| |||||||| ||   ||||||||||||||||||||||| |||||| ||| |||||||||||| ||||| |||||    
T  989239 atcctctccatttgacaaattaaatgga-gtttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtcc 989148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 7712331 - 7712438
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| |||||   |||||||||||||| |  |||||| |||||||||||| |||||| ||||||| || ||||||||||||||||||| || | ||    
T  7712331 gatcctctccatttataaaaataaatggaag-atgcaatttagagagagatagagacataagatagatagtgagtcctaccattaagtgggtgccaccat 7712429  T
Q  248 cattaatta 256  Q
    | |||||||    
T  7712430 ctttaatta 7712438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 44648076 - 44647966
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg--tccctct 245  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| ||| |||| ||||||||  ||||||     
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtctccctcc 44647977  T
Q  246 atcattaatta 256  Q
    |||||||||||    
T  44647976 atcattaatta 44647966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 7373985 - 7373872
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 240  Q
    |||||| |||||||||| || | |||||||||||| | ||  ||||||||||||||||||  ||| |||||||| | |||||| ||| ||||||| | ||    
T  7373985 gggttaagatcctcttcgttggttaaaataaatggga-tatgcaatttggagagagataggtacaaaaaatagacagtgggtcttactattaagtagatc 7373887  T
Q  241 cctctatcattaatt 255  Q
    || ||||||||||||    
T  7373886 ccactatcattaatt 7373872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 331
Target Start/End: Complemental strand, 16366630 - 16366447
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||| |  ||||||||  ||| |||||||| |||||| ||||| | ||    
T  16366630 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccat 16366531  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    |||||||||              ||| |||||| |||| ||||| ||||||||| ||| ||||||||||| |||| ||||||||    
T  16366530 cattaattatattttacttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaaacacataaatggaga 16366447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 332
Target Start/End: Original strand, 47500236 - 47500430
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgg 237  Q
    |||||||| |||||||| |||||  |||||||||| ||  |    |||||||||||||||||||||| || |||||||  ||||||| |||| |||||||    
T  47500236 aggggttaagatcctctccatttactaaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgg 47500335  T
Q  238 gtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||   |||||||||||              ||||||||| ||||||| ||| |||| |||||| | |||||||||| ||||| |||||||||    
T  47500336 gtcccatcatcattaattattttttatttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagag 47500430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 332
Target Start/End: Original strand, 45260429 - 45260574
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| ||||||| ||||   |||||||||||               || ||||||||||||    
T  45260429 ttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattatattttactttttttaagattttatgtgtc 45260528  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||| ||||||||| ||| ||||||||||| |||| ||| |||||    
T  45260529 tttatctctccaaattgaagaaatggagaaacacataaatagagag 45260574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 8149686 - 8149613
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| ||||||||||| || |||||||  || |||||| || ||||||||||||||| | |||||||||||    
T  8149686 caatttgaagagagatagagacgtaaaataagtagtgggtcatatcattaagtgggtcccaccatcattaatta 8149613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 24193668 - 24193611
Alignment:
Q  185 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    ||||| |||||||||||||||||||||||| |||| ||| ||||||||| ||| ||||    
T  24193668 atttgaagagagatagacacataaaatagacaatgagtcttaccattaaatggatccc 24193611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 216  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 6882149 - 6882216
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||  || ||| ||||| ||| ||||||    
T  6882149 ttttatgtgtctttatctcttcaaatggaacaaatggagaaagttataaattgagaggatcctaactc 6882216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 8608020 - 8607957
Alignment:
Q  281 tgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactcg 344  Q
    ||||||| ||| | ||||||||||| ||||||||||||  || ||||||||| |||||||||||    
T  8608020 tgtgtctctatctttccaaatggaacaaatggagaaagttataaatggagaggatcttaactcg 8607957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 32915943 - 32915880
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctta 339  Q
    |||| ||||||||||| ||||||||||||| ||||||||||  |||| ||||| ||| ||||||    
T  32915943 ttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggatctta 32915880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 34986033 - 34986092
Alignment:
Q  271 caaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||||||||||  || ||| ||||||||||| | |||||||||||||||| |||||||||    
T  34986033 caaaattttatgt--ctatatctctccaaatggtagaaatggagaaagacataaatggagag 34986092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  137 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 203  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 18064643 - 18064588
Alignment:
Q  170 aaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctac 227  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| | || |||||||    
T  18064643 aaatggaa-tacacaatt-ggagagagatagacacataaaatagacagtgagtcctac 18064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 18198377 - 18198260
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 238  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||| | ||||||||| |||||||||  ||||| || ||| |||||| |    
T  18198377 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgag 18198278  T
Q  239 tccctctatcattaatta 256  Q
    |||| | |||||||||||    
T  18198277 tcccaccatcattaatta 18198260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 19889115 - 19889156
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  19889115 ttttatgtgtctttatctctctaaatggaataaatggagaaa 19889156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 30588612 - 30588539
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||  ||||||||||||| ||||||  | | |||||||| || |||||||||||| | |||||||||||    
T  30588612 caatttgggaagagatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccatcattaatta 30588539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 46802331 - 46802388
Alignment:
Q  185 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||| |||||||||||||| | ||||||||   |||||||||||| ||||||||||||    
T  46802331 atttagagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtccc 46802388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 30588529 - 30588489
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaa 316  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  30588529 ttttatgtgtctttatctctctaaatggaacaaatggagaa 30588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 34897794 - 34897940
Alignment:
Q  7 tggacatcatcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttgga 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34897794 tggacatcttcaataccgttttgttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcgga 34897893  T
Q  107 atccaagtcaacatgtaatagaggtgggtgagaggggttaggatcct 153  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34897894 atccaagtcaacatgtaattgaggtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 1995573 - 1995448
Alignment:
Q  131 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 230  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||     
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataatgagtcctaccaa 1995474  T
Q  231 taagtgggtccctctatcattaatta 256  Q
    |||||| ||| | | |||||||||||    
T  1995473 taagtgagtctcaccatcattaatta 1995448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  142 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 216  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 550903 - 550974
Alignment:
Q  272 aaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  550903 aaaattttatgtatctttatctctccaaatggaagaaatggagaaagacataaatggagaggatcttaactc 550974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 331
Target Start/End: Original strand, 43719910 - 43720093
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||| | ||||||||||||  |   ||| ||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||| | ||    
T  43719910 gatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccat 43720009  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    |||||||||               || ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||    
T  43720010 cattaattatattttattttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 43720093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 317
Target Start/End: Complemental strand, 27033763 - 27033594
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||||| ||||||| |||| | ||    
T  27033763 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccat 27033664  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| |||||||||||    
T  27033663 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 27033594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 2230056 - 2229902
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||| | || | |||||||||||              ||||||||||||||||    
T  2230056 ttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaattatattttacttttttcaaaattttatgtgtc 2229957  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| |||||||||  || |||| |||||| |||| |||| |||| ||| ||||    
T  2229956 tttatctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaac 2229902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 19830394 - 19830502
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||| |||| ||||||||| |||||||||  ||||||||||||||||||||||||| | ||    
T  19830394 gatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccat 19830493  T
Q  248 cattaatta 256  Q
    |||||||||    
T  19830494 cattaatta 19830502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 34373904 - 34373750
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||||||||||| |||||||||  |||||||||||| ||| | |||||| | |||||||||||              ||| ||||||||||||    
T  34373904 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaattatattttacttttttcaagattttatgtgtc 34373805  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| ||||||||| ||||||||| ||||| ||||  |||||||| ||| ||||    
T  34373804 tttatctctccaaattgaaaaaatgaagaaacacattgatggagaggatcctaac 34373750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 10474400 - 10474489
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 236  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| |||||||||||||||||||||||| |||||| ||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataatggatcctactattaagtg 10474489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 332
Target Start/End: Complemental strand, 48084939 - 48084747
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 239  Q
    |||||| |||||||| |||||| |||||||||| ||  |   |||||||| |||||||||||||| || |||||||  ||||||| |||| |||||||||    
T  48084939 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggt 48084840  T
Q  240 ccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||   |||||||||||              ||||||||| ||||||| ||| ||||||||||| | |||||||||| ||||| |||||||||    
T  48084839 cccatcatcattaattattttttatttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagag 48084747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 29586447 - 29586340
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    ||||||||||||||   | |||||||||| |||  || ||||||||||||||||||||||||||||||| |  ||| ||| |||||||||||| | | ||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagatagtaagtcttactattaagtgggtctcaccat 29586349  T
Q  248 cattaatta 256  Q
    |||||||||    
T  29586348 cattaatta 29586340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 44638052 - 44637961
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| |||||||||||||||| |||  ||||| ||||||| |||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagatagtggaccctactattaagtaggtcc 44637961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 24754769 - 24754675
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| ||||||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccc 24754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 24763766 - 24763672
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| ||||||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccc 24763672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 33632899 - 33632849
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaa 233  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  33632899 caatttggagagagatagacacataaaatagatagtggatcctactattaa 33632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 40851758 - 40851692
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  40851758 attttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaac 40851692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 54911732 - 54911658
Alignment:
Q  182 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||| ||||||||||| ||||||||||| || |||||||||||||||| || || || | |||||||||||    
T  54911732 acaatttgaagagagatagagacataaaataggtagtgggtcctaccattaaatgagttccaccatcattaatta 54911658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 52859471 - 52859536
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaa 340  Q
    ||||||||||| ||||| ||||||||||| | |||||||||||||||| |||| |||| |||||||    
T  52859471 attttatgtgtatttatttctccaaatggtagaaatggagaaagacataaatgaagagaatcttaa 52859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 34373593 - 34373731
Alignment:
Q  193 agagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttata 292  Q
    ||||||||||||  |||||||||  |||||||||||| |||||||||||| | |||||||||||              ||| ||||| ||| |||||||     
T  34373593 agagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttttgtctctttatc 34373692  T
Q  293 tctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    ||||||||| ||| ||||||||||| |||| ||||||||    
T  34373693 tctccaaattgaagaaatggagaaacacataaatggaga 34373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 51982549 - 51982636
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 236  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| ||||||||||| || ||||| ||| |||||||||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatagttagtgggttctatcattaagtg 51982636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 215  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 31523666 - 31523739
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||  | |||||||||||| | |||||||||||    
T  31523666 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaatta 31523739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 3009233 - 3009169
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaa 340  Q
    |||||||||||||||| |||| |||||||| |||||||||||   || ||||||||| |||||||    
T  3009233 ttttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatcttaa 3009169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 47750274 - 47750361
Alignment:
Q  153 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| ||| ||||| ||||||||||| | ||| || ||||||||| ||||    
T  47750274 tcttcatttgacaaaataaatg-aggtatacaatttgaagagacataaacacaaaaaatagataaagagtcttatcattaagtgagtcc 47750361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 19830522 - 19830589
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacat-gaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||| ||| ||||  ||||||||| ||||||||    
T  19830522 attttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggatcttaac 19830589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 49289042 - 49289093
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatg 327  Q
    |||||||||||||||| |||||||||| || ||||||||||| |||| ||||    
T  49289042 ttttatgtgtctttatttctccaaatgaaacaaatggagaaaaacataaatg 49289093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 25285843 - 25285885
Alignment:
Q  191 agagagatagacacataaaatagataatgggtcctaccattaa 233  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||    
T  25285843 agagagatagacacataaaatagatagtggatcctatcattaa 25285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 46167466 - 46167416
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 237  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| |||||||    
T  46167466 ttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtgg 46167416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 12402950 - 12402893
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||||||||| |||||||||  | |||||| ||||| |||| |||||||||    
T  12402950 attttatgtgtctttatctctccaaattaagaaaatgaagaaacacataaatggagag 12402893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 31523749 - 31523790
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  31523749 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 31523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 40851886 - 40851793
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||||  |||||| ||||||||||||  |   ||| ||||||| ||||||||||| |||||||||  ||||| | |||| |||||||||||    
T  40851886 gatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcc 40851793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 42613157 - 42613084
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| ||||||||||||| | ||||||  |  ||||||||| || |||||||||||| | |||||||||||    
T  42613157 caatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaatta 42613084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 49679268 - 49679341
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |   |||||||| || ||| |||||||| | |||||||||||    
T  49679268 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaatta 49679341  T

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Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 7215807 - 7215923
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 7215906  T
Q  240 ccctctatcattaatta 256  Q
    ||| |||||||||||||    
T  7215907 cccactatcattaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 2800566 - 2800682
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggt 2800665  T
Q  240 ccctctatcattaatta 256  Q
    ||| | |||||| ||||    
T  2800666 cccaccatcattgatta 2800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 4804569 - 4804367
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 238  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggg 4804470  T
Q  239 tccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||| | |||||||||||              ||||||||||||||||||||| ||||||||| ||| ||||||||||| | || ||||||||| ||| |    
T  4804469 tcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcct 4804370  T
Q  339 aac 341  Q
    |||    
T  4804369 aac 4804367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 317
Target Start/End: Complemental strand, 7162196 - 7162027
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||| | |||||||||||| | ||    
T  7162196 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccat 7162097  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| |||||||||||    
T  7162096 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 7162027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 21159332 - 21159497
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| |||||| ||||||||||| |  |   ||| ||||||||| ||||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  21159332 gatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 21159431  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatgga 313  Q
    |||||||||              ||| ||||||||||||||||||||||||||| ||| |||||||    
T  21159432 cattaattatattttacttttttcaagattttatgtgtctttatatctccaaattgaagaaatgga 21159497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 17828532 - 17828625
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||||| |||||| || ||||| |||| |||  |||||||||||||||||||||||||||||||||| ||| | |||| ||||||||| ||||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagatagtggattctactattaagtggatccc 17828625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 27826608 - 27826542
Alignment:
Q  190 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  27826608 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 27826542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 1249150 - 1249302
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||| ||||| |  ||||||||  |||||||||||| |||||||||||| | |||||||||||              ||| ||||||||||||    
T  1249150 ttggagagagacagacaaa--aaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtc 1249247  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| | ||||||| ||| ||||||||||| |||| ||||||||| ||||||||    
T  1249248 tttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaac 1249302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 17944274 - 17944166
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||||||||||  ||||||||||||  |    || ||||||||||||||||||| |||||||||  | |||||||||| ||| |||||||| | ||    
T  17944274 gatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcccaccat 17944175  T
Q  248 cattaatta 256  Q
    |||||||||    
T  17944174 cattaatta 17944166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 29698216 - 29698082
Alignment:
Q  207 aaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaa 306  Q
    |||||||||  ||| ||||||||||||||||||||| | |||||||||||              ||| ||||||||||||||||| ||||||||| |||     
T  29698216 aaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtctttatttctccaaattgaag 29698117  T
Q  307 aaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||| |||| ||||||||| ||| ||||    
T  29698116 aaatggagaaacacataaatggagaggatcctaac 29698082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 23936365 - 23936271
Alignment:
Q  150 tcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||| ||||||||||| | |||| |||||||||||| |||||||||  ||||||||||| || ||||  || | |||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataagatggatagcggattctaccattaagtgggtccc 23936271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 32737863 - 32737793
Alignment:
Q  271 caaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| | || ||||||||| ||| ||||    
T  32737863 caaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaac 32737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 12412710 - 12412641
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||||||  ||||||||  |||||||||||| ||||||||| || | |||||||||||    
T  12412710 ttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaatta 12412641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 13089751 - 13089820
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||| || ||||||  |||||||||||| |||||||| ||| | |||||||||||    
T  13089751 ttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggccccaccatcattaatta 13089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 24484956 - 24484883
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||| || |||||||||||| | |||||||||||    
T  24484956 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaatta 24484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 227526 - 227621
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||||| |||||| |||||||||||||  |   || |||||||||||||||||||| || |||||||  |||||||||||| ||||||| ||||    
T  227526 gatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatccc 227621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacac 183  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 27826522 - 27826460
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||||||||| |||| |||||||| |||| |||||| |||| ||||||||| |||||    
T  27826522 ttttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatggagaggatctt 27826460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 32254031 - 32254102
Alignment:
Q  185 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||| |||||||||| | |||| || |  ||||||||| ||||||||| ||||| |||||||||||||    
T  32254031 atttggagggagatagacaaaaaaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaatta 32254102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 9954332 - 9954370
Alignment:
Q  191 agagagatagacacataaaatagataatgggtcctacca 229  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9954332 agagagatagacacataaaatagatagtgggtcccacca 9954370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 13888520 - 13888594
Alignment:
Q  183 caatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||| ||||| || |||||||  ||| |||||||||||| ||||||||   |||||||||||    
T  13888520 caatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccatcatcattaatta 13888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 30460805 - 30460759
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagaca 321  Q
    ||||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  30460805 attttatgtgtctttatctctccaaatagaagaaatgaagaaagaca 30460759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 2142291 - 2142364
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  ||||||| | ||||| |||||| || | |||||||||||    
T  2142291 caatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaatta 2142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 205  Q
    ||||||| |||||| || |||||||||| |||  |||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 39426330 - 39426214
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 39426231  T
Q  240 ccctctatcattaatta 256  Q
    ||| |||||||||||||    
T  39426230 cccactatcattaatta 39426214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 32887735 - 32887851
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 238  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| ||| ||| |||||||||||| ||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgga-gtacacagtttagagaaagatagacacataaaataaatagtggatcctaccattaaatggg 32887833  T
Q  239 tccctctatcattaatta 256  Q
    |||| | |||||||||||    
T  32887834 tcccaccatcattaatta 32887851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 35534741 - 35534825
Alignment:
Q  142 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacc 228  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagatagtggatcctacc 35534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 26860010 - 26860121
Alignment:
Q  144 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccct 243  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||||| || ||||||| ||||     
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagatagtaggtcctatcactaagtggatccca 26860108  T
Q  244 ctatcattaatta 256  Q
    | |||||||||||    
T  26860109 caatcattaatta 26860121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 26372362 - 26372256
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| ||||||||| ||| | ||||||||||||||||||||| | |     
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaatagacaatagatcctaccattaagtgggtcccaccac 26372265  T
Q  248 cattaatta 256  Q
    |||||||||    
T  26372264 cattaatta 26372256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 12151840 - 12151686
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||              ||| ||||||||||||    
T  12151840 ttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtc 12151741  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| ||||||||| ||| ||||||||||| |||| ||||| ||| ||||||||    
T  12151740 tttatctctccaaattgaataaatggagaaacacataaatggggaggatcttaac 12151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 332
Target Start/End: Original strand, 50294026 - 50294210
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||| |||  | ||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccat 50294125  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||||||              ||| ||||||||||||||||| ||||||||||||| |||| |||||| || | |||||||||    
T  50294126 cattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaatggagag 50294210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 50484498 - 50484305
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||| | |||| |||||||||||| |  |    
T  50484498 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtcccaccgt 50484399  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||||||||||||| |||||||||  || ||||||||||| |||| ||||||||| ||||||||    
T  50484398 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 50484305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 5047379 - 5047452
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||| || ||||||||| | |||||||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcccaccatcattaatta 5047452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 32618911 - 32618805
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||||||||||  | |||||||||| |||  |||||||||||||||| |||| ||||| |||||| ||| |||||| ||||||| |||||| | ||    
T  32618911 gatcctcttcatttggcataataaatgga-gtatccaatttggagagagatggacatataaa-tagatagtggatcctactattaagtaggtcccaccat 32618814  T
Q  248 cattaatta 256  Q
    |||||||||    
T  32618813 cattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 7840681 - 7840736
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccc 242  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  7840681 ttggagagagatagacacaagaaatagatgatgggtcctaccattaagcgggtccc 7840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 12381000 - 12381066
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  12381000 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12381066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 12385067 - 12385133
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  12385067 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12385133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 45978007 - 45977941
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  45978007 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 45977941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 40988704 - 40988643
Alignment:
Q  271 caaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||  || |||||||||    
T  40988704 caaaattttgtgtgtctttatctctccaaatagaaaaaatggagaaagttataaatggagag 40988643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 18976260 - 18976376
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 239  Q
    |||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||| ||| |||||||||| |||    
T  18976260 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggt 18976359  T
Q  240 ccctctatcattaatta 256  Q
    |||   |||||||||||    
T  18976360 cccatcatcattaatta 18976376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 24977318 - 24977248
Alignment:
Q  182 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcatta 252  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||||||| ||||||||| || | |||||||    
T  24977318 acaatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcatta 24977248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 48327244 - 48327310
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||  |||||||||||||||||||| |||| || ||| |||| ||||||||| ||||||||    
T  48327244 attttatgtacctttatatctccaaatggaagaaattgataaacacataaatggagaggatcttaac 48327310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 30077642 - 30077715
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  ||||| ||| || |||||| ||||| |||||||||||||    
T  30077642 caatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaatta 30077715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 5854799 - 5854917
Alignment:
Q  137 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 236  Q
    |||||||||| |||||||| ||||||| | |||||||||| ||| |||||||| | ||||||||||| | ||| | || | ||| ||||||||| || ||    
T  5854799 agaggggttatgatcctctacatttgaaagaataaatgga-gtatacaatttgaaaagagatagacataaaaatttgagagtggatcctaccataaaatg 5854897  T
Q  237 ggtccctctatcattaatta 256  Q
    | ||||   |||||||||||    
T  5854898 gatcccatcatcattaatta 5854917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 7841800 - 7841866
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||| ||| | || ||||||||| ||| ||||    
T  7841800 attttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaatggagagaatcctaac 7841866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 24413291 - 24413353
Alignment:
Q  194 gagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||| ||||| |||  ||||||||| |||||| |||||||| | |||||||||||    
T  24413291 gagatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaatta 24413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 48327156 - 48327210
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||||||||||||| | |||||||||  || ||||||||| |||||||||||    
T  48327156 ttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggtcc 48327210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 203  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 23862046 - 23862103
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||||||||| | ||||||| ||| |||| |||||| ||||||||| ||||    
T  23862046 attttatgtgtctttatctttccaaattgaagaaatagagaaacacatgaatgaagag 23862103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 52280037 - 52280110
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||| | ||||||  |  ||||||||| || ||||||| |||| | |||||||||||    
T  52280037 caatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaatta 52280110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 1228496 - 1228560
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 205  Q
    |||||| ||||||||||||||  |||||||||||||  |   ||||||||||||||| |||||||    
T  1228496 gggttaagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacaca 1228560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 1609628 - 1609696
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||||||||||||  |||| ||||| || ||||||  |||||||| |||| |||| ||||||||||    
T  1609628 attttatgtgtctttacctctctaaatgaaagaaatgggaaaagacataaatgaagaggatcttaactc 1609696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 12380831 - 12380907
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 215  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12380831 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 12384898 - 12384974
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 215  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12384898 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 27982171 - 27982072
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    ||||||| |||||||| |||||   |||||||||||||| |  ||||||||||||| ||||||| | |||||| ||  ||||||| | |||||| |||||    
T  27982171 ggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagatatagacataaaaaatatatgttgggtcccatcattaaatgggt 27982073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 45978117 - 45978041
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcc 224  Q
    ||||||||  |||||||||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||    
T  45978117 gatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtcc 45978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 30709228 - 30709115
Alignment:
Q  142 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    |||||||||||||| ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcc 30709129  T
Q  242 ctctatcattaatt 255  Q
    | | ||||||||||    
T  30709128 caccatcattaatt 30709115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 4446852 - 4446967
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 240  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||| |||||||| ||| |||||     
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggtt 4446951  T
Q  241 cctctatcattaatta 256  Q
     | |||||||||||||    
T  4446952 tcactatcattaatta 4446967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 19908899 - 19908784
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 238  Q
    |||||| | |||||||||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||| || |||||||  |||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgga-gtatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtggg 19908802  T
Q  239 tccctctatcattaatta 256  Q
    |||| | |||||||||||    
T  19908801 tcccaccatcattaatta 19908784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 216  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 338
Target Start/End: Complemental strand, 13238793 - 13238603
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||||||  ||||||||||| | ||    
T  13238793 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccat 13238694  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| |||| ||||||  ||| ||||||||| |||||    
T  13238693 cattaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggatctt 13238603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 31618724 - 31618838
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||||||||||||| |||||||||||  ||||||| ||| |||||||||||| ||||||| | |||||||||||| || ||| || ||||||||| ||    
T  31618724 ggggttaggatcctctccatttgataaag-aaatgga-gtatacaatttggagaaagatagatatataaaatagatagtgagtcatatcattaagtgagt 31618821  T
Q  240 ccctctatcattaatta 256  Q
    ||| | |||||||||||    
T  31618822 cccacaatcattaatta 31618838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 35316937 - 35316744
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| |||||||||||| | ||    
T  35316937 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccat 35316838  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||| ||||||||| ||||||||| ||| ||||||||||| || | ||||||||| ||| ||||    
T  35316837 cattaattatattttacttttttcaagattttatatgtctttatctctccaaattgaagaaatggagaaacacgtaaatggagaggatcctaac 35316744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 28564961 - 28564813
Alignment:
Q  191 agagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaa-attttatgtgtcttt 289  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||               ||| |||||||||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttaaaagattttatgtgtcttt 28564862  T
Q  290 atatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    || ||||||||| ||| ||||||||||| |||| ||||||||| |||||    
T  28564861 atctctccaaattgaagaaatggagaaacacataaatggagaggatctt 28564813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 15709862 - 15709772
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| ||   |||||||||||    
T  15709862 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 210  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 36929810 - 36929720
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||| || || ||||||||||||| ||| | || | |||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaataggtagtgtgtcctaccattaaatggattccgccatcattaatta 36929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 30857638 - 30857749
Alignment:
Q  144 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccct 243  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| |||||||||||||| |||||| ||||| ||| || |     
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaaatggatcaca 30857736  T
Q  244 ctatcattaatta 256  Q
    | |||||||||||    
T  30857737 ccatcattaatta 30857749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 215  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 8988932 - 8988859
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  | || ||||||| || |||||||||||| | |||||||||||    
T  8988932 caatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaatta 8988859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 34512022 - 34512095
Alignment:
Q  182 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatt 255  Q
    |||||||||||| |||||||||||||||||||||| |||||  ||| ||||||| |||| | | ||||||||||    
T  34512022 acaatttggagaaagatagacacataaaatagatagtgggttatactattaagtaggtctcacaatcattaatt 34512095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 35315286 - 35315359
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| |||||||||||||||||||||||||||||| || ||| ||||| || ||||| | || ||||||||    
T  35315286 caatttgaagagagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaatta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 38397158 - 38397085
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||| |||||||| ||||| | |||| ||||||    
T  38397158 caatttgaagagagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccatcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 39465760 - 39465703
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  39465760 attttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatggagag 39465703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 21454494 - 21454565
Alignment:
Q  184 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||| |||||||||||||||| |||||||||  |||||| ||||||||||||||| || | |||||||||||    
T  21454494 aatttagagagagatagacaca-aaaatagattgtgggtcataccattaagtgggttccaccatcattaatta 21454565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 41983431 - 41983495
Alignment:
Q  277 tttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||| |||||||||  || ||||||||||| |||| ||||||||| ||||||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaac 41983495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 214  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 375070 - 374997
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||  | |||||||||||| | |||||||||||    
T  375070 caatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaatta 374997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 23259489 - 23259558
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||| ||||||| |  |||||||||| | ||||||| |||| | |||||||||||    
T  23259489 ttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaatta 23259558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 35315620 - 35315521
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 240  Q
    |||||| |||||||| |||||   |||||||||||||| |  ||||||||||||||||| ||||| | ||||| |  ||||||||| ||||||||| |||    
T  35315620 gggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagataaacacaaacaataggtggtgggtcctatcattaagtgagtc 35315522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 15722328 - 15722239
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatt 255  Q
    ||||||||||||| ||  ||||||||| ||||||| ||| |||||||||||| |   |||||||||||| ||||| || | ||||||||||    
T  15722328 aaaataaatggaa-tatgcaatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaatt 15722239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 374987 - 374946
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  374987 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 2061362 - 2061293
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactcg 344  Q
    |||||||| |||||||| ||||||||||||| |||| |||| |   || ||||||||| |||||||||||    
T  2061362 attttatgcgtctttatctctccaaatggaagaaattgagatactaataaatggagaggatcttaactcg 2061293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  142 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 191  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 8988850 - 8988809
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  8988850 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 8988809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 12949455 - 12949386
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactcg 344  Q
    ||||||||| ||||||| ||||||||| | | ||| ||||||||||||  |||||||  |||||||||||    
T  12949455 attttatgtatctttatctctccaaataggagaaacggagaaagacatagatggagaagatcttaactcg 12949386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 19905958 - 19905889
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcatta 252  Q
    |||||| ||||||||||||||||||||||||||  |||| | ||  |||||||| ||||| | |||||||    
T  19905958 caattttgagagagatagacacataaaatagatggtgggacatattattaagtgagtcccaccatcatta 19905889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 23459844 - 23459917
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |   |||||||| || ||| |||||||| | |||||||||||    
T  23459844 caatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaatta 23459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 29188647 - 29188606
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  29188647 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 29188606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 157417 - 157350
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactcg 344  Q
    |||||||| ||||| | ||||||||| ||| |||||||||||||||| || || ||| |||||||||||    
T  157417 ttttatgt-tctttttctctccaaatagaacaaatggagaaagacataaagggggaggatcttaactcg 157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 374528 - 374596
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||||||| ||||| |||| ||||| || ||| ||||||| |||| ||||||||| ||||| ||||    
T  374528 attttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaatggagagaatcttgactc 374596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 10877688 - 10877621
Alignment:
Q  273 aaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||| ||||| ||||||||| ||| ||||||||||| |||| |||| |||| ||| ||||    
T  10877688 aaattttatgtgt-tttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 10877621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 19901881 - 19902074
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 19901980  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||||||||||||||||||||| ||||||||| ||| |||| |||||| |||| ||||||||| ||||||||    
T  19901981 cattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaac 19902074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 23610754 - 23610561
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||| | ||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccat 23610655  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||| ||              ||| ||||||||| ||||||| ||||||||| ||| ||||||||||| | || ||||||||| ||||||||    
T  23610654 cattaaatatattttacttttttcaagattttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 23610561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 56558400 - 56558198
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 238  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||| || ||||||||    
T  56558400 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtggg 56558301  T
Q  239 tccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||| | |||||||||||              ||||||||||||||||||||| ||||||||| ||| |||| |||||| | || ||||||||| ||| |    
T  56558300 tcccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacatataaatggagaggatcct 56558201  T
Q  339 aac 341  Q
    |||    
T  56558200 aac 56558198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 331
Target Start/End: Original strand, 5763159 - 5763308
Alignment:
Q  182 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttat 281  Q
    |||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||| | |||||||||||              |||||||||||    
T  5763159 acaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaaaattttat 5763258  T
Q  282 gtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    |||||||||| ||||||||| ||| ||||||||||| | || ||||||||    
T  5763259 gtgtctttatctctccaaattgaagaaatggagaaacatataaatggaga 5763308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 5416429 - 5416536
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  5416429 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacaca-aaaatagattgtgggtcctaccactaagtgggtcccaccat 5416527  T
Q  248 cattaatta 256  Q
    |||||||||    
T  5416528 cattaatta 5416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 36532741 - 36532646
Alignment:
Q  143 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| ||| ||||| |||| |||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggt 36532646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  140 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 211  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 42844148 - 42844258
Alignment:
Q  145 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctc 244  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| |||||||||||||||||||| | || ||||||| ||||| ||| ||||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaatagagagtgtgtcctactattaaatggatccctc 42844246  T
Q  245 tatcattaatta 256  Q
     |||||||||||    
T  42844247 catcattaatta 42844258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 332
Target Start/End: Complemental strand, 34778533 - 34778349
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||| ||||||||||||||| |||||||||  ||| |||||||| |||||||||||| | ||    
T  34778533 gatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccat 34778434  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||||||              ||| ||||||||||||||||| |||||| || ||| ||||||||||| |||| |||||||||    
T  34778433 cattaattatattttacttttttcaagattttatgtgtctttatctctccacattgaagaaatggagaaacacataaatggagag 34778349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 1871392 - 1871281
Alignment:
Q  144 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccct 243  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || ||||||| ||| |||||| | ||||||||||||     
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtccca 1871294  T
Q  244 ctatcattaatta 256  Q
      |||||||||||    
T  1871293 tcatcattaatta 1871281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 322
Target Start/End: Original strand, 3952133 - 3952307
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| | |||||||||  |||||||||||| |||||||||| | | ||    
T  3952133 gatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccat 3952232  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacat 322  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||||    
T  3952233 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat 3952307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 56453777 - 56453891
Alignment:
Q  141 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| ||||||| |  ||||||||| ||||||||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggt 56453874  T
Q  240 ccctctatcattaatta 256  Q
    ||| | |||||| ||||    
T  56453875 cccaccatcattcatta 56453891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 5815267 - 5815350
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 235  Q
    ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||  |||||| |||||||||| ||||| |||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacac--aaaatatataatgggtcataccactaagt 5815350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 13493387 - 13493276
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtccct 243  Q
    ||||||||||  |||||| |||||||||||| |||  |||||| ||||||||  ||||||| ||||||||||| ||| ||| |||| |||||| ||||||    
T  13493387 aggatcctctctatttgacaaaataaatgga-gtatgcaatttagagagagagatagacacgtaaaatagatagtggatcccaccactaagtgagtccct 13493289  T
Q  244 ctatcattaatta 256  Q
     ||||||||||||    
T  13493288 ttatcattaatta 13493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 24073689 - 24073620
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||||||  ||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  24073689 ttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaatta 24073620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 38079810 - 38079875
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaa 340  Q
    ||||||||||||||||| ||||||||| |||||||||||||||  ||| ||||||||| |||||||    
T  38079810 attttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggatcttaa 38079875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 48914516 - 48914589
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||| ||| |||||||| || |||||||||||||    
T  48914516 caatttagagagagatcgacacataaaatagattgtgggtcctatcataaagtgggttccgctatcattaatta 48914589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 56269074 - 56269147
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||||| |||||||||||| | |||||||||||    
T  56269074 caatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaatta 56269147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 18207003 - 18207196
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||| |||||||||| |  |   ||| || |||||||||||||| | |||||||||  |||||||||||| ||||||||||||   ||    
T  18207003 gatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcccatcat 18207102  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||||||||||||| | ||||||| ||| |||| |||||| |||| ||||||||| ||| ||||    
T  18207103 cattaattatattttacctttttcaagattttatgtgtctttatctttccaaattgaagaaattgagaaacacataaatggagaggatcctaac 18207196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 12153156 - 12153090
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  12153156 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 12153090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 25442271 - 25442333
Alignment:
Q  281 tgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||||||| ||||||||||||| |||||||||| | ||| ||||||||| ||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaactc 25442333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 33247218 - 33247284
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  33247218 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 33247284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 12312589 - 12312650
Alignment:
Q  271 caaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||||||||||||| |||| |||| ||| ||||||||||| |||| |||||||||    
T  12312589 caaaattttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatggagag 12312650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 23474188 - 23474115
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||| ||||  |||| | |||||||||||    
T  23474188 caatttggggagagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 211  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 47922324 - 47922424
Alignment:
Q  143 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcc 241  Q
    |||| |||||||| |||||| |||||||||| ||  |   ||||||||||||| ||||||||| || |||||||  |||||||||||| |||||||||||    
T  47922324 gttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcc 47922423  T
Q  242 c 242  Q
    |    
T  47922424 c 47922424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 12241498 - 12241564
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| |||| |||| ||| ||||    
T  12241498 attttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 12241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 52018768 - 52018702
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||| ||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  52018768 attttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 52018702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 5524524 - 5524451
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||| | ||||||  |  ||||||||| || |||||||||||| | |||||||||||    
T  5524524 caatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaatta 5524451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 30567970 - 30567905
Alignment:
Q  191 agagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||| |||||||||  |||||||||||| ||||||||| ||   |||||||||||    
T  30567970 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaatta 30567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 36688186 - 36688259
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  || |||||| || |||||||||||| | |||||||||||    
T  36688186 caatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaatta 36688259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 50483554 - 50483627
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||| |||||||||| ||||||||||| | | ||| ||||||||||| ||| |  ||||||||||||    
T  50483554 caatttggagacagatagacacgtaaaatagatattcgatcccaccattaagtgagtcacattatcattaatta 50483627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 33247093 - 33247201
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||  ||||| |||||| ||| ||||| || | ||    
T  33247093 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttccaccat 33247192  T
Q  248 cattaatta 256  Q
    |||||||||    
T  33247193 cattaatta 33247201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 33262639 - 33262699
Alignment:
Q  272 aaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||||||||||||||||||| ||||||||| ||| |||| || ||| |||| |||||||||    
T  33262639 aaaattttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaatggagag 33262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 39862629 - 39862521
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||  || |||||| || ||| || || || | ||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttccaccat 39862530  T
Q  248 cattaatta 256  Q
    |||||||||    
T  39862529 cattaatta 39862521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 17080730 - 17080785
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggag 330  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||||| |||| |||||||    
T  17080730 attttatctgtctttatctctccaaattgaagaaatggagaaacacataaatggag 17080785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 24073602 - 24073539
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||| ||| || ||||||||||||| |||| |||||| |||| ||||||||| |||||    
T  24073602 attttatgtgccttcatctctccaaatggaagaaattgagaaacacataaatggagaggatctt 24073539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 33262557 - 33262623
Alignment:
Q  190 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||| |||||||||  ||| |||||||| ||| | |||||| | |||||||||||    
T  33262557 gagagagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaatta 33262623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 1015852 - 1015925
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||| |||||||||||||||| ||||||  |  ||||||| | ||||| ||||||||| | |||||||||||    
T  1015852 caatttagagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaatta 1015925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 5416557 - 5416614
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||||||||| | ||||||| ||| ||||||||||| |||| ||| |||||    
T  5416557 attttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaattgagag 5416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 5818013 - 5817976
Alignment:
Q  182 acaatttggagagagatagacacataaaatagataatg 219  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataatg 5817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 12312438 - 12312547
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa-tagataatgggtcctaccattaagtgggtccctcta 246  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| | |||| |||||  ||| |||||||| ||||||||||||   |    
T  12312438 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtcccatca 12312537  T
Q  247 tcattaatta 256  Q
    ||||||||||    
T  12312538 tcattaatta 12312547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 36003216 - 36003300
Alignment:
Q  154 cttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    |||||||||  |||||||||| |||||  ||||||||||||||||| | ||| |||||| ||| |||||| |  ||||||||||||    
T  36003216 cttcatttgtcaaaataaatg-aagtatgcaatttggagagagataaatacaaaaaataaatattgggtcatgtcattaagtgggt 36003300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 37002332 - 37002373
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  37002332 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 37002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 56269158 - 56269199
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  56269158 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 56269199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 46804671 - 46804635
Alignment:
Q  220 ggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||  |||||||||||||    
T  46804671 ggtcctaccattaagtgggtccaactatcattaatta 46804635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 42761831 - 42761717
Alignment:
Q  142 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||| | ||||||| |    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggttc 42761732  T
Q  242 ctctatcattaatta 256  Q
    |   |||||||||||    
T  42761731 catcatcattaatta 42761717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 338
Target Start/End: Complemental strand, 28069831 - 28069641
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  28069831 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 28069732  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||              ||| ||||||||||||||||| ||||||||||||| |||| || ||| |||| ||||||||| |||||    
T  28069731 cattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgaaaaacacataaatggagaggatctt 28069641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 30426671 - 30426825
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtc 286  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||              ||| ||||||||||||    
T  30426671 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttacttttttcaagattttatgtgtc 30426770  T
Q  287 tttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||| ||||||||| ||| ||||||| ||| |||| ||||||||| ||| ||||    
T  30426771 tttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaac 30426825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 21360400 - 21360299
Alignment:
Q  139 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaag 234  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| ||||||||| | || ||||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataatagatcataccattaag 21360302  T
Q  235 tgg 237  Q
    |||    
T  21360301 tgg 21360299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 36991468 - 36991275
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| |  |||||||| ||||||||||||| |||||||||||| | ||    
T  36991468 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccat 36991369  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| |||||| |||||||||| ||||||||| ||| ||||||||||| |||| |||| |||| ||| ||||    
T  36991368 cattaattatatttgacttttttcaagattttacgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaac 36991275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 42338008 - 42338117
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctct 245  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  ||||||||||| ||| |  ||| |||||||| |||||||     
T  42338008 aggatcctcttcatttgataaaataaatt-aagtatataatttggagagatatatacatgtaaaatagatagtggattgtactattaagtgtgtccctcc 42338106  T
Q  246 atcattaatta 256  Q
    |||||||||||    
T  42338107 atcattaatta 42338117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 18689585 - 18689495
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| ||   |||||||||||    
T  18689585 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 24557162 - 24557252
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||| |  ||||||||| ||||||| | ||||||||||| |||||||||||||||||||||| |||||   |||||||||||    
T  24557162 aaaataaatggaag-atgcaatttggaaagagatatagacataaaataggtaatgggtcctaccattaagtgagtcccatcatcattaatta 24557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 5033095 - 5033025
Alignment:
Q  271 caaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||||| | || ||||||||| ||||||||    
T  5033095 caaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaac 5033025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 26749546 - 26749619
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||| | |||||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaatta 26749619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 6014307 - 6014198
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtccctcta 246  Q
    |||||||| |||||| |||||||||| ||  |   ||||||||||| ||||||||||| || ||||||| || |||||||||||||||||| |||   ||    
T  6014307 gatcctctccatttgctaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtggatcctatta 6014208  T
Q  247 tcattaatta 256  Q
    ||||||||||    
T  6014207 tcattaatta 6014198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 17520459 - 17520403
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 239  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  17520459 caatttggagagatatagacacataaaatagatagcgagtcctactattaagtgggt 17520403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 36748492 - 36748562
Alignment:
Q  185 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||| ||||||||||| |||||||| |  ||||||||||||||||||| |||| | |||||||||||    
T  36748492 atttggagatagatagacaca-aaaatagacagcgggtcctaccattaagtggatcccaccatcattaatta 36748562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 332
Target Start/End: Complemental strand, 45113390 - 45113198
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 239  Q
    |||||| |||||||| |||||| |||||||||| |   |   ||||||||||||| ||||||||| || |||||||  ||||||| |||| |||||| ||    
T  45113390 gggttaagatcctctccatttgctaaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgt 45113291  T
Q  240 ccctctatcattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    |||   |||||||||||              ||||||||||||||||| ||| ||||||||||| ||||||| |||| || || |||||||||    
T  45113290 cccatcatcattaattattttttatttttttcaaaattttatgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggagag 45113198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 8412239 - 8412182
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||| ||||| |||| |||||||||||||| ||||| |||| |||||||||    
T  8412239 attttatgtgtatttatctctctaaatggaaaaaatgaagaaaaacataaatggagag 8412182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 10672519 - 10672583
Alignment:
Q  192 gagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||| |||||||||  ||| |||||||| |||||| ||||| | |||||||||||    
T  10672519 gagagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaatta 10672583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 28318989 - 28319048
Alignment:
Q  272 aaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    |||||||||||||||||| | ||||||||| ||| ||||||||||| || | ||||||||    
T  28318989 aaaattttatgtgtctttgtctctccaaattgaagaaatggagaaacacgtaaatggaga 28319048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 37966397 - 37966487
Alignment:
Q  138 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacca 229  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||  | ||||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctacca 37966487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  137 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 203  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 41511247 - 41511181
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    ||||||||||| ||||| ||||||||| ||| ||||||| ||| |||| ||||||||| ||| ||||    
T  41511247 attttatgtgtttttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaac 41511181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 28584581 - 28584626
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagaca 321  Q
    |||||| ||| ||||| ||||||||||||| |||||||||||||||    
T  28584581 ttttatatgtttttatctctccaaatggaataaatggagaaagaca 28584626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 40695249 - 40695298
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtg 236  Q
    ||||||||||||||||||| |||||||||  | |||||||||| ||||||    
T  40695249 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtg 40695298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 27490096 - 27490164
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||||| | ||| | ||| ||||||||| |||| ||||||||||| ||||||||  ||||||||||    
T  27490096 attttatgtatttttgtctcttcaaatggaagaaattgagaaagacataaatggagaagatcttaactc 27490164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 34612640 - 34612568
Alignment:
Q  184 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||| |||||||||||||||| ||||||  |  ||||||||| || |||||||||| | | |||||||||||    
T  34612640 aatttagagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaatta 34612568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 148 - 256
Target Start/End: Complemental strand, 29341106 - 29340999
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| | ||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccat 29341008  T
Q  248 cattaatta 256  Q
    |||||||||    
T  29341007 cattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 32129580 - 32129773
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |  | || ||||||||||||||||||  |||||||||  |||||||||||| |||||||||||| | ||    
T  32129580 gatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccat 32129679  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||||||||||||||||||||| ||||||||| ||| ||||||||||| | || ||||||||| ||| ||||    
T  32129680 cattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaac 32129773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 35660572 - 35660765
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  35660572 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 35660671  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| ||| ||||||| |||| ||| ||||| ||||||||    
T  35660672 cattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaacggagaaacacataaatagagaggatcttaac 35660765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 317
Target Start/End: Original strand, 4895699 - 4895867
Alignment:
Q  149 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatc 248  Q
    |||||||| |||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | |||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatc 4895798  T
Q  249 attaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaa 317  Q
    ||||||||              ||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  4895799 attaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaa 4895867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 11775905 - 11775711
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| |||||||||||| |  |    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgt 11775806  T
Q  248 cattaatta-nnnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||               ||| ||||||||||| ||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||||||||    
T  11775805 cattaattatattttactttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaac 11775711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 18625384 - 18625574
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||| | ||    
T  18625384 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccat 18625483  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatctt 338  Q
    |||||||||              ||| ||||||||||||||||| |||||||||| || |||| || ||| |||| ||||||||| |||||    
T  18625484 cattaattatattttatttttttcaagattttatgtgtctttatctctccaaatgaaagaaattgaaaaacacataaatggagaggatctt 18625574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 37266843 - 37266650
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||| | ||    
T  37266843 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccat 37266744  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||              ||| ||||||||||||||||| ||||||||| ||| ||||||| ||| || | ||||||||| ||| ||||    
T  37266743 cattaattatattttagttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacgtaaatggagaggatcctaac 37266650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 340
Target Start/End: Complemental strand, 39902525 - 39902335
Alignment:
Q  150 tcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatca 249  Q
    |||||| ||||||| ||||||||||||  |  |||| ||||||||||||| |||||  ||||||||  |||||||||||| ||| ||| | || | ||||    
T  39902525 tcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatca 39902426  T
Q  250 ttaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaa 340  Q
    |||||||               || ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| |||||||    
T  39902425 ttaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcttaa 39902335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 43309220 - 43309113
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | |||||||||| ||| || ||||||||| ||||| || | ||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttccaccat 43309121  T
Q  248 cattaatt 255  Q
    ||||||||    
T  43309120 cattaatt 43309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 14349876 - 14349807
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  14349876 ttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta 14349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 13032230 - 13032038
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||  || ||||||||| ||| |||||||| | ||    
T  13032230 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtcccaccat 13032131  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||               || ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  13032130 cattaattatattttattttttt-aagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 13032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 31653112 - 31653039
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||| ||||||||||||||||  | ||||||| |||||||| ||| | | |||||||||||    
T  31653112 caatttggagagagataaacacataaaatagatagcgagtcctactattaagtgagtctcacaatcattaatta 31653039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 40753164 - 40753233
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||| ||||||||||| |||||| ||  |||||||||||| |||||||||||| | |||||||||||    
T  40753164 ttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaatta 40753233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 34827287 - 34827196
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||  ||  ||| ||||||||||||||||| | |||||||||  ||| |||||||| |||||||||||| | ||| |||||||    
T  34827287 aaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaatta 34827196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  146 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 212  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 10173927 - 10173865
Alignment:
Q  281 tgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||||||| |||||||||| |  |||||||||| ||||| ||||||||| ||||||||||    
T  10173927 tgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaactc 10173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 10362012 - 10362069
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 240  Q
    ||||| ||||||||||||| ||||||||| | || ||| |||||||||||||||||||    
T  10362012 caattaggagagagatagagacataaaattggtagtggatcctaccattaagtgggtc 10362069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 18653438 - 18653385
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 236  Q
    ||||||| ||||||||||||||| |||||||||| || || |||||||||||||    
T  18653438 caatttgaagagagatagacacaaaaaatagatagtgagttctaccattaagtg 18653385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 36290679 - 36290606
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||| || ||||||| |||| | |||||||||||    
T  36290679 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaatta 36290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 2984389 - 2984461
Alignment:
Q  184 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||||||||||||||||  | |||  ||||| || ||| |||||||| | |||||||||||    
T  2984389 aatttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaatta 2984461  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 11704249 - 11704214
Alignment:
Q  281 tgtgtctttatatctccaaatggaaaaaatggagaa 316  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11704249 tgtgtctttatctctccaaatggaaaaaatggagaa 11704214  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 43405620 - 43405553
Alignment:
Q  276 ttttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    |||||||| ||||||| | | ||||||||| |||||||||||||||| |||| | || ||||||||||    
T  43405620 ttttatgtatctttatcttttcaaatggaacaaatggagaaagacataaatgaaaagaatcttaactc 43405553  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 4348120 - 4348178
Alignment:
Q  285 tctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    ||||||| |||||||||| || |||| ||||||||||| ||| ||||| ||||||||||    
T  4348120 tctttatctctccaaatgtaacaaattgagaaagacataaatagagaggatcttaactc 4348178  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 14688643 - 14688597
Alignment:
Q  191 agagagatagacacataaaatagataatgggtcctaccattaagtgg 237  Q
    |||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  14688643 agagagatcgacacataaaatagatattggattctaccattaagtgg 14688597  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  141 gggttaggatcctcttcatttgataaaataaatgg 175  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 27428879 - 27428949
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaa 253  Q
    ||||||||| ||||||||||||| |||||||||  ||  ||||||||||||||| || || | ||||||||    
T  27428879 caatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 3057152 - 3057225
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||| ||||||| ||||| |||||||||  ||| ||||||||||||||| ||| |   |||||||||||    
T  3057152 caatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaatta 3057225  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 31279990 - 31279933
Alignment:
Q  184 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 241  Q
    ||||||||||| | ||||||||||||||| ||  ||||||||| ||||| ||||||||    
T  31279990 aatttggagagtgctagacacataaaataaattgtgggtcctatcattatgtgggtcc 31279933  T

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Target: scaffold0012 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 208175 - 207982
Alignment:
Q  148 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctat 247  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||| ||||| |||||||||  |||||||||||| ||||||||||||   ||    
T  208175 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcat 208076  T
Q  248 cattaattannnnnnnnnnnnnncaaaattttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaac 341  Q
    |||||||||               || ||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||| ||||    
T  208075 cattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaac 207982  T

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Target: scaffold0062 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 58774 - 58684
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| ||   |||||||||||    
T  58774 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 58684  T

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Target: scaffold0062; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 70885 - 70796
Alignment:
Q  165 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatt 255  Q
    ||||||||||||| ||  ||||||||| ||||||| ||| |||||||||||| |   |||||||||||| ||||| || | ||||||||||    
T  70885 aaaataaatggaa-tatgcaatttggaaagagataaacatataaaatagatagtttatcctaccattaaatgggttccaccatcattaatt 70796  T

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Target: scaffold0250 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 7220 - 7151
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||| |||||||||  |||||||||| ||||||||||| || | |||||||||||    
T  7220 ttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaatta 7151  T

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Target: scaffold0121 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 29567 - 29640
Alignment:
Q  183 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||| |||||||||||| ||||||||||| |||| ||||||| ||||| ||| ||||| |||||||||||||    
T  29567 caatttagagagagatagagacataaaataggtaataggtcctagcattacgtgagtcccactatcattaatta 29640  T

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Target: scaffold0035 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 16399 - 16468
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| ||||||||||||   |||||||||||    
T  16399 ttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaatta 16468  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 9203 - 9272
Alignment:
Q  187 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    ||||||||||||||||||| |||||||||  ||||||| |||| ||||||| | || | |||||||||||    
T  9203 ttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattccaccatcattaatta 9272  T

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Target: scaffold0008; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 9288 - 9356
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagagtatcttaactc 343  Q
    |||| ||||| |||||| ||||||||||||| |||| |||||| |||| ||||||||| ||||| ||||    
T  9288 atttcatgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggatcttcactc 9356  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 17311 - 17377
Alignment:
Q  190 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtccctctatcattaatta 256  Q
    |||||||||||||||| ||||||  |  ||||||||| || |||||||||||| | |||||||||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaatta 17377  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 73930 - 73987
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggagag 332  Q
    ||||||||||| ||||| |||| |||| ||| ||||||||||| |||| |||||||||    
T  73930 attttatgtgtttttatctctctaaattgaagaaatggagaaacacataaatggagag 73987  T

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Target: scaffold0456 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 13681 - 13641
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggaga 315  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  13681 attttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 22532 - 22588
Alignment:
Q  275 attttatgtgtctttatatctccaaatggaaaaaatggagaaagacatgaatggaga 331  Q
    ||||||||||| ||||| |||| ||||| || ||||||||| |||||| ||||||||    
T  22532 attttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggaga 22588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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