View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5596_high_2 (Length: 256)
Name: NF5596_high_2
Description: NF5596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5596_high_2 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0583 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 612582 - 612667
Alignment:
| Q |
171 |
ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatcatct |
256 |
Q |
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| T |
612582 |
ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatcatct |
612667 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 612427 - 612494
Alignment:
| Q |
16 |
atgaacaaggacaaactgtatcactcattggaaatagttataatagataataaggttgtttgacacca |
83 |
Q |
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| T |
612427 |
atgaacaaggaaaaactgtctcactcattgcaaatagttataatagataataaagttgtttgacacca |
612494 |
T |
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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 15652296 - 15652380
Alignment:
| Q |
171 |
ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatcatct |
256 |
Q |
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| T |
15652296 |
ctcaatcgaatatgatactgttgaattcgttcctgatgtctccc-ttcacataaacaaactttgagtatcaatggtcgaatcatct |
15652380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 15652144 - 15652211
Alignment:
| Q |
16 |
atgaacaaggacaaactgtatcactcattggaaatagttataatagataataaggttgtttgacacca |
83 |
Q |
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| T |
15652144 |
atgaacaaggacaaactctctcactcattggaaatagttataatagataataaggttgtttgacacca |
15652211 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 39437352 - 39437413
Alignment:
| Q |
193 |
gaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatcat |
254 |
Q |
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| T |
39437352 |
gaattcgtttatgatatttcccattcgcatcaagaaacttggagtatcgatggtcgaatcat |
39437413 |
T |
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Target: scaffold0583 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0583
Description:
Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 7781 - 7845
Alignment:
| Q |
190 |
gttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatcat |
254 |
Q |
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| T |
7781 |
gttgaaatcgtttctgatatctcccattcgcatcacgaaatttggagtatcaatggtcgaatcat |
7845 |
T |
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Target: scaffold0356 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 3689 - 3761
Alignment:
| Q |
182 |
atgataccg-ttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatca |
253 |
Q |
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| T |
3689 |
atgataccgattgaattcgttttcgatatctcccattcacatcatgaaatttggagtatcaattgtcgaatca |
3761 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 14106264 - 14106336
Alignment:
| Q |
182 |
atgataccg-ttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatca |
253 |
Q |
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| T |
14106264 |
atgataccgattgaattcgttttcgatatctcccattcacatcatgaaatttggagtatcaattgtcgaatca |
14106336 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 16047226 - 16047154
Alignment:
| Q |
182 |
atgataccg-ttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatca |
253 |
Q |
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| T |
16047226 |
atgataccgattgaattcgttttcgatatctcccattcacatcatgaaatttggagtatcaattgtcgaatca |
16047154 |
T |
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