View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5597-Insertion-1 (Length: 123)

Name: NF5597-Insertion-1
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5597-Insertion-1
NF5597-Insertion-1
[»] chr4 (3 HSPs)
chr4 (8-123)||(1326356-1326471)
chr4 (8-123)||(4875948-4876063)
chr4 (16-58)||(44185420-44185462)
[»] chr3 (1 HSPs)
chr3 (8-123)||(5387540-5387655)
[»] scaffold0831 (1 HSPs)
scaffold0831 (23-123)||(2128-2228)
[»] chr8 (12 HSPs)
chr8 (50-114)||(26531509-26531573)
chr8 (55-122)||(27183114-27183181)
chr8 (55-122)||(27231104-27231171)
chr8 (85-123)||(12646273-12646311)
chr8 (15-123)||(12651335-12651443)
chr8 (15-123)||(18081331-18081439)
chr8 (19-123)||(18095540-18095644)
chr8 (15-123)||(18140263-18140371)
chr8 (19-114)||(12721475-12721570)
chr8 (67-114)||(31135858-31135905)
chr8 (28-71)||(6116952-6116995)
chr8 (28-71)||(12704852-12704895)
[»] chr5 (2 HSPs)
chr5 (23-123)||(24654588-24654688)
chr5 (23-50)||(29417742-29417769)
[»] chr1 (1 HSPs)
chr1 (55-123)||(51869152-51869220)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 1326356 - 1326471
Alignment:
Q  8 atattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttca 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1326356 atattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctcttttatttca 1326455  T
Q  108 aaacccttatttcatg 123  Q
    ||||||||||||||||    
T  1326456 aaacccttatttcatg 1326471  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 4875948 - 4876063
Alignment:
Q  8 atattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttca 107  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||| ||||| | |||| ||| |||||||||||||||    
T  4875948 atattcccgatgacatttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttca 4876047  T
Q  108 aaacccttatttcatg 123  Q
    ||||||| ||||||||    
T  4876048 aaaccctaatttcatg 4876063  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 44185420 - 44185462
Alignment:
Q  16 gatgacatttccttctctattctttccaaattacccctcaaat 58  Q
    ||||| ||||| || ||||||||||||||||||||||||||||    
T  44185420 gatgaaatttcgttttctattctttccaaattacccctcaaat 44185462  T

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Target: chr3 (Bit Score: 80; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 5387540 - 5387655
Alignment:
Q  8 atattgccgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttca 107  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||| | |||||||||||||||||    
T  5387540 atatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttca 5387639  T
Q  108 aaacccttatttcatg 123  Q
    ||||||| ||||||||    
T  5387640 aaaccctaatttcatg 5387655  T

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Target: scaffold0831 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 2228 - 2128
Alignment:
Q  23 tttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 122  Q
    ||||||||  |||| | |||||| |||| || ||||||||||| |||||||| |||||||||||  ||||||||||||||||| || | ||| |||||||    
T  2228 tttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcat 2129  T
Q  123 g 123  Q
    |    
T  2128 g 2128  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 26531509 - 26531573
Alignment:
Q  50 ccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    |||||||||||||||| || ||||| ||||| |||||| ||||||||||||||||| ||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttatttgaaaaccct 26531573  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 27183114 - 27183181
Alignment:
Q  55 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 122  Q
    ||||||||||| |||||||| ||||  | |||| |||||||||||||||||||||||||| |||||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcat 27183181  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 27231171 - 27231104
Alignment:
Q  55 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 122  Q
    ||||||||||| |||||||| ||||  | |||| |||||||||||||||||||||||||| |||||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcat 27231104  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 12646273 - 12646311
Alignment:
Q  85 aaaccatggtctcttttatttcaaaacccttatttcatg 123  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12646273 aaaccatggtctcttttatttcaaaaccctcatttcatg 12646311  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 12651335 - 12651443
Alignment:
Q  15 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    ||||||| || | |||||||| || |||||||| || || |||||||||| |||| | || |||||    |||  |||||||||||||||||||||||||    
T  12651335 cgatgacgttgctttctctatactctccaaattgcctcttaaatctctcacacgactcacctgtgctaagaaataatggtctcttttatttcaaaaccct 12651434  T
Q  115 tatttcatg 123  Q
     ||||||||    
T  12651435 catttcatg 12651443  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 18081331 - 18081439
Alignment:
Q  15 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    |||||||||| | ||||| |||||||| ||||||||   ||||||||||| ||| || || |||||    ||| ||||||||||| | ||||||||||||    
T  18081331 cgatgacattgctttctccattctttctaaattaccttacaaatctctcacacgtttcacttgtgctaaaaaatcatggtctcttctttttcaaaaccct 18081430  T
Q  115 tatttcatg 123  Q
     ||||||||    
T  18081431 aatttcatg 18081439  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 18095540 - 18095644
Alignment:
Q  19 gacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatt 118  Q
    |||||| | ||||| ||||| ||||||||||| |||||||| |||||||| || || |||||   |||| ||||||| ||| | || ||||||||| |||    
T  18095540 gacattgctttctccattctctccaaattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtcacttcttttccaaaaccctaatt 18095639  T
Q  119 tcatg 123  Q
    |||||    
T  18095640 tcatg 18095644  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 18140371 - 18140263
Alignment:
Q  15 cgatgacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    |||||||||| | ||||| ||||| || ||||| ||  | |||||||||||||| ||||| |||||    ||| ||||||| |||||||| |||||||||    
T  18140371 cgatgacattgctttctccattctctctaaattgcctattaaatctctcaaacgttttacctgtgctaaaaaatcatggtcacttttattccaaaaccct 18140272  T
Q  115 tatttcatg 123  Q
     ||||||||    
T  18140271 aatttcatg 18140263  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 12721475 - 12721570
Alignment:
Q  19 gacatttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    |||||| | ||||||||||| |||||||| || || ||||||||||||||||| || ||||     ||| |||||| ||||||||| |||||||||    
T  12721475 gacattgctttctctattctctccaaattgccgcttaaatctctcaaacgattcacttgtgttaaaaaatcatggtttcttttattccaaaaccct 12721570  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 31135905 - 31135858
Alignment:
Q  67 cgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaaccct 114  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||||||    
T  31135905 cgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccct 31135858  T

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Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 6116952 - 6116995
Alignment:
Q  28 ttctctattctttccaaattacccctcaaatctctcaaacgatt 71  Q
    |||||||||||||||||||| || || ||||| |||||||||||    
T  6116952 ttctctattctttccaaattgcctcttaaatccctcaaacgatt 6116995  T

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Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 12704852 - 12704895
Alignment:
Q  28 ttctctattctttccaaattacccctcaaatctctcaaacgatt 71  Q
    |||||||||||||||||||| || || ||||| |||||||||||    
T  12704852 ttctctattctttccaaattgcctcttaaatccctcaaacgatt 12704895  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 24654588 - 24654688
Alignment:
Q  23 tttccttctctattctttccaaattacccctcaaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcat 122  Q
    ||||||||||||||||||||||||||||  | |||||  |||| || |||   |||| | | ||| ||||||| ||||||||  | ||||||||||||||    
T  24654588 tttccttctctattctttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatggtcccttttattagataacccttatttcat 24654687  T
Q  123 g 123  Q
    |    
T  24654688 g 24654688  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 50
Target Start/End: Complemental strand, 29417769 - 29417742
Alignment:
Q  23 tttccttctctattctttccaaattacc 50  Q
    ||||||||||||||||||||||||||||    
T  29417769 tttccttctctattctttccaaattacc 29417742  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 51869152 - 51869220
Alignment:
Q  55 aaatctctcaaacgatttacgtgtgcatgcaaaccatggtctcttttatttcaaaacccttatttcatg 123  Q
    |||||| | |||||||||   ||||||| ||||||||||||||| |||||| || ||||| ||||||||    
T  51869152 aaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaagaccctcatttcatg 51869220  T

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