View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597-Insertion-3 (Length: 826)
Name: NF5597-Insertion-3
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 376 - 826
Target Start/End: Complemental strand, 10342779 - 10342331
Alignment:
| Q |
376 |
gggaagagtgactgattattgaggatttccgcacccagccaacattgatttgaaaacttgacgtttttgagtgtgaattgtctcatatcctgtgtccatg |
475 |
Q |
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| T |
10342779 |
gggaagagtgactgattattgaggatttccgcacccagccaacattgagt-gaaaacttgacgtttttgagtgtgaattgtctcatatcctgtgtccatg |
10342681 |
T |
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| Q |
476 |
ttcttagaaatgcaattagaatataatcagattgaagatacagtgtatccacagtttcacacaattaatata-----tacagtttttactgtatttcacg |
570 |
Q |
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| T |
10342680 |
ttcttagaaatgcaattagaatataatcagattgaagatacagtgtatccacagtttcacacaattaatataatatatacagtttttactgtatttcacg |
10342581 |
T |
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| Q |
571 |
tatggaagaagatattccaattcaaagcatagactttttccttaatatttggtaagagaatatatattttattttatacagtacaaatctgaacatgttt |
670 |
Q |
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| T |
10342580 |
tatggatgaagatattccaattcaaagcatagacttattcctcaatatttggttagagaatatatattttat-----acagtacaaatctgaacatgttt |
10342486 |
T |
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| Q |
671 |
tcatgatataaactgatcttgtttccacacacctctttgtacaaatactactttcttgaaactttctgtaacaccacattggatgtatgaacaaaaatgc |
770 |
Q |
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| T |
10342485 |
tcatgatataaactgatcttgtttccacacacctctttgtacaaatactaatttcttgaaactttctgtaacaccacattggatgtatgaacaaaaatgc |
10342386 |
T |
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| Q |
771 |
aatatgctgcaacatatagcatcatctacattgactttcccagtctcagaatgcag |
826 |
Q |
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| T |
10342385 |
aatatgctgcaacatatagcatcatctacattgac-ttcccaatctcagaatgcag |
10342331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 113 - 349
Target Start/End: Complemental strand, 10343038 - 10342806
Alignment:
| Q |
113 |
gtgattggcgacatcaaatggacggtgcctcacatataactacgggtcagtcgtcatgtgatccaactcaaataaatatgtataacaatatcaactttgt |
212 |
Q |
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| T |
10343038 |
gtgattggcgacatcaaatggacggtgcctcacatataactacgggtcactc---atgtgatccaactcaaataaatatgtataacaatatcaactttat |
10342942 |
T |
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| Q |
213 |
aagctgagttagtgttcgcctcatgtttataacactagctaatatccatggaaaattggttggatacacaaggtgtcataatagctaatttttaaatgag |
312 |
Q |
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| T |
10342941 |
aagctgagttagtgttcgccgcatgtttataacaccgactaatatccatggaaaattggttggatacacaaggtgacataatagctaa-ttttaaatgag |
10342843 |
T |
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| Q |
313 |
ttggacattttgaccttccctccgatatttatgtgtc |
349 |
Q |
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| T |
10342842 |
ttggacattttgaccttccctccgatatttatgtgtc |
10342806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10343105 - 10343043
Alignment:
| Q |
11 |
tttggtgatgataaatcaagcccaaatctatgaagtggccatagagtggagacaaataaatga |
73 |
Q |
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| T |
10343105 |
tttggtgatgataaatcatgcccaaatctatgaagtggccatacagtggagacaaataaatga |
10343043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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