View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597-Insertion-5 (Length: 382)
Name: NF5597-Insertion-5
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 22326347 - 22326540
Alignment:
| Q |
7 |
aaaaacagtgtttagttttacaaaaacatagaataaaaacactaaagaatgttatataaatagatcatatagtcgcagattcgcatagtattcagcaacg |
106 |
Q |
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| T |
22326347 |
aaaaacagtgtttagttttacaaaaacattgaataaaaacactaaagaatgttatataaatagatcatatagtcgcagattcgcatagaattcagcaaca |
22326446 |
T |
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| Q |
107 |
gatnnnnnnnnnta-ctcaattatattagcaacctggtttacgagagtgatgtgcccgccgtgctgctgtaagggagattggaaggataagaat |
199 |
Q |
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| T |
22326447 |
gataaaaaaaaaaaccccaattatattggcaacctggtgaacgagagggctgcggccgccgtgatgctgtaagggagattggaaggataagaat |
22326540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 22334720 - 22334797
Alignment:
| Q |
196 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagggaagtcggttggtgttgtttgat |
273 |
Q |
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| T |
22334720 |
gaatggtgattttataattggtttgtggtggtcggagttaattaaatcttagagagaagtcggttggtgttgtttgat |
22334797 |
T |
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