View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597-Insertion-8 (Length: 285)
Name: NF5597-Insertion-8
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 21352719 - 21352982
Alignment:
| Q |
24 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtgcaacaatccaatgttcaaactgagtgttt |
123 |
Q |
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| T |
21352719 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatcttctccgggttatgtgtaacaatccatttttcaaactgagtgttt |
21352818 |
T |
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| Q |
124 |
cgctggtcctttgtccaaggatttccgcaaaataaattgggaagtagaatgctgcaaatttgttgaagataactaggttttggaaacgtacttgaaattt |
223 |
Q |
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| T |
21352819 |
cgctggtcctttgtccaaggatttccgcaaaataaattgggaagtagaatgctgcaaatttgttgaagataactagggtttggaaacgtacttgaaattt |
21352918 |
T |
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| Q |
224 |
ccaaccgacacca--agaagtaagaacatattttgaagtgattttgcgattccctctaggctgt |
285 |
Q |
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| T |
21352919 |
ccaaccgacaccaagagaagtaagaacatattttgaagtgattttgcgattccctctaggctgt |
21352982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 26236 - 26398
Alignment:
| Q |
24 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtgcaacaatccaatgttcaaactgagtgttt |
123 |
Q |
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| T |
26236 |
agtcatgaattcatctgccagccactctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtccagtaatccattgttcaaactgagtgttt |
26335 |
T |
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| Q |
124 |
cgctggtcctttgtccaaggatttccgcaaaataaattgggaagtagaatgctgcaaatttgt |
186 |
Q |
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| T |
26336 |
ggctggtcctttgtccatggatttccacgaaataagtctggaagtagaatgctgcaaatttgt |
26398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 28112 - 28161
Alignment:
| Q |
236 |
aagaagtaagaacatattttgaagtgattttgcgattccctctaggctgt |
285 |
Q |
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| T |
28112 |
aagaagtaagaacaaattttgaagtgattttgtgatacactttaggctgt |
28161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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