View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_high_3 (Length: 417)
Name: NF5597_high_3
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_high_3 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 4957140 - 4956722
Alignment:
| Q |
1 |
ttgctcatatcaaacgtgagatctcaattcttcgccgtgttcgacaccctaatattgttcaattgtttgaggtaatggcta-caaaaacaaagatctatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4957140 |
ttgctcatatcaaacgtgagatctcaattcttcgccgtgttcgacacccgaatattgttcaattgtttgaggtaatggctaacaaaaacaaagatctatt |
4957041 |
T |
|
| Q |
100 |
ttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtaggttgaaagaagaggttgctagaaagtattttcaacaattgatttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4957040 |
ttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtaggttgaaagaagaggttgctagaaagtattttcaacaattgatttc |
4956941 |
T |
|
| Q |
200 |
tgctgttggattttgtcatgctagaggt-gtttatcatagggatcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattt |
298 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956940 |
tgctgttggattttgtcatgctagaggttgtttatcatagggatcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattt |
4956841 |
T |
|
| Q |
299 |
tggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956840 |
tggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaa |
4956741 |
T |
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| Q |
399 |
ggttatgatggtgcaaagg |
417 |
Q |
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| T |
4956740 |
ggttatgatggtgcaaagg |
4956722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 45268360 - 45268324
Alignment:
| Q |
353 |
ttgtggtactcctgcttatgttgcacctgaggttttg |
389 |
Q |
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|||||| ||||||||||||||||||||||| |||||| |
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| T |
45268360 |
ttgtgggactcctgcttatgttgcacctgaagttttg |
45268324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 417
Target Start/End: Original strand, 35827769 - 35828180
Alignment:
| Q |
6 |
catatcaaacgtgagatctcaattcttcgccgtgttcgacaccctaatattgttcaattgtttgaggtaatggctacaaaaacaaagatctattttgtta |
105 |
Q |
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||||||||||| || ||||| ||||| ||||||||||| ||||| || ||||||||| | ||||| || ||||||||||| |||||||| || ||||| | |
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| T |
35827769 |
catatcaaacgagaaatctccattctgcgccgtgttcgtcaccccaacattgttcaactctttgaagtcatggctacaaagacaaagatttactttgtga |
35827868 |
T |
|
| Q |
106 |
tggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtaggttgaaagaagaggttgctagaaagtattttcaacaattgatttctgctgt |
205 |
Q |
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|||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || || |||||||| || || || | |||||| |
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| T |
35827869 |
tggaatatgtacgaggtggtgagcttttcaacaaggttgctaaaggtaggttgaaagaagaagttgcaaggaaatattttcagcagttaatatgtgctgt |
35827968 |
T |
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| Q |
206 |
tggattttgtcatgctagaggtgtttatcatagggatcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattttggtttg |
305 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||||| | ||||| || ||||||||| | |
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| T |
35827969 |
tggattttgtcatgctagaggtgtttttcatagagatctaaagcctgaaaatttgttgcttgatgaaaaaggtaaccttaaagtttcagattttggtctt |
35828068 |
T |
|
| Q |
306 |
agtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatg |
405 |
Q |
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| T |
35828069 |
agtgctgtgtcggatgaaattaagcaagatgggttgtttcatactttttgtggtacacctgcttatgttgctcctgaggttttgtctaggaaaggttatg |
35828168 |
T |
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| Q |
406 |
atggtgcaaagg |
417 |
Q |
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||||||| |||| |
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| T |
35828169 |
atggtgctaagg |
35828180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 40354107 - 40354003
Alignment:
| Q |
261 |
ttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggta |
360 |
Q |
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||||||||||| ||| ||||||||||| | |||||||||||||| ||| || |||| |||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
40354107 |
ttgcttgatgataattgtaatttgaaactttctgattttggtttaagtattgcttctcatcaaattagacaagatggtctgtttcttactttttgttgta |
40354008 |
T |
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| Q |
361 |
ctcct |
365 |
Q |
| |
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||||| |
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| T |
40354007 |
ctcct |
40354003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 43305814 - 43305846
Alignment:
| Q |
333 |
gatggtttgtttcatactttttgtggtactcct |
365 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
43305814 |
gatggtttgtttcttactttttgtggtactcct |
43305846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 412
Target Start/End: Complemental strand, 27312474 - 27312242
Alignment:
| Q |
180 |
tattttcaacaattgatttctgctgttggattttgtcatgctagaggtgtttatcatagggatcttaagcctgaaaatttgttgcttgatgagaatggta |
279 |
Q |
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|||||||| ||||| || || |||||||| | ||||||| | |||| |||| |||| ||||||||||||| || |||||||| | ||||| ||||| | |
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| T |
27312474 |
tattttcatcaattaatctcggctgttggttattgtcattcacgaggggtttttcatcgggatcttaagccggagaatttgttattagatgaaaatggga |
27312375 |
T |
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| Q |
280 |
atttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacc |
379 |
Q |
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| T |
27312374 |
atttaaaagtttcggatttcgggttaagtgcagtcacaaatcagatccgatccgatggattgcttcatactctttgtggaacccctgcttacgtggcacc |
27312275 |
T |
|
| Q |
380 |
tgaggttttggctaggaaaggttatgatggtgc |
412 |
Q |
| |
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||||||| | |||| | ||| ||||||||||| |
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| T |
27312274 |
tgaggttcttgctaagcgaggatatgatggtgc |
27312242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 31892668 - 31892720
Alignment:
| Q |
330 |
caagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctga |
382 |
Q |
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| T |
31892668 |
caagatggtttgttgcatacaacttgtggaactcctgcttatgttgctcctga |
31892720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 44721173 - 44721141
Alignment:
| Q |
333 |
gatggtttgtttcatactttttgtggtactcct |
365 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
44721173 |
gatggtttgtttcttactttttgtggtactcct |
44721141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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