View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_high_4 (Length: 342)
Name: NF5597_high_4
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 42472387 - 42472703
Alignment:
| Q |
11 |
catcatcagcaagttttttaagaatcaaacaagttgtatcgtacatccttatcaagctacaaatagaagaaaaatgtgacctcaaacaagtatctccaac |
110 |
Q |
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| T |
42472387 |
catcatcagcaagttttttaagaatcgaacaagttgtatcgtacatccttatcaagctacaaatagaagaaaaatgtgacctcaaacaagtatctccaac |
42472486 |
T |
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| Q |
111 |
tctttgtaaactaccaatttgatttgccccttcgccaatttcactgatctctagcaaatgtgcgatttcatttaacttggcagctagcgactcatcatgg |
210 |
Q |
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| T |
42472487 |
tctttgtaaactaccaatttgatttgccccttcgccaatttcactgatctctagcaaatgtgcgatttcatttaacttggcagctagcgactcatcatgg |
42472586 |
T |
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| Q |
211 |
ggcttactacaagaattgaaaaaattgacaatagaagtcaactttgaaaagaattgttgaattggaaaaacttctgacgatgcacaaaccaaggcaggtt |
310 |
Q |
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| T |
42472587 |
ggcttactacaagaattgaaaaaattgacaatagaagtcaactttgaaaagaattgttgaattggaaaaacttctgacgatgcacaaaccaaggcaggtt |
42472686 |
T |
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| Q |
311 |
gcaacttatgttcaaaa |
327 |
Q |
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| T |
42472687 |
gcaacttatgttcaaaa |
42472703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 320
Target Start/End: Original strand, 42479777 - 42479942
Alignment:
| Q |
155 |
tgatctctagcaaatgtgcgatttcatttaacttggcagctagcgactcatcatggggcttactacaagaattgaaaaaattgacaatagaagtcaactt |
254 |
Q |
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| T |
42479777 |
tgatctttagcaaatgtgcaatttcatctaacttggcagcaagtaactcatcatggggcttactacaacaagagaaaaaatctacaatagaattcaattc |
42479876 |
T |
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| Q |
255 |
tgaaaagaattgttgaattggaaaaacttctgacgatgcacaaaccaaggcaggttgcaacttatg |
320 |
Q |
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| T |
42479877 |
agaaaagaacaggtaaattggagtaacttctgacgatgcacaaaccaaggcagattgcaacttatg |
42479942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 96408 - 96332
Alignment:
| Q |
39 |
acaagttgtatcgtacatccttatcaagctacaaatagaagaaaaatgtgacctcaaacaagtatctccaactcttt |
115 |
Q |
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| T |
96408 |
acaagttgcttcatacatacttatcaagctacaaatagaattgaaatgtgatccccaacgagtatctccagctcttt |
96332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 5087833 - 5087757
Alignment:
| Q |
39 |
acaagttgtatcgtacatccttatcaagctacaaatagaagaaaaatgtgacctcaaacaagtatctccaactcttt |
115 |
Q |
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| T |
5087833 |
acaagttgcttcatacatacttatcaagctacaaatagaattgaaatgtgatccccaacgagtatctccagctcttt |
5087757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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