View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_high_5 (Length: 320)
Name: NF5597_high_5
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 4956416 - 4956710
Alignment:
| Q |
10 |
catcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956416 |
catcatcattgtcaccaaaaccatcatcgacattacaaagcctgtcgtcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctc |
4956515 |
T |
|
| Q |
110 |
cataatatcaggtattgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagtttcgataaatctggtgaaaaccacctaggacaccgaaac |
209 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||| |
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| T |
4956516 |
cataatatcaggtatcgcaatcctagtttcaggcttagtatcaagaagacgaacaagcagttttgataagtccggtgaaaaccacctgggacaccgaaac |
4956615 |
T |
|
| Q |
210 |
tcacccttgtaaattttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
304 |
Q |
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| T |
4956616 |
tcacccttgtaaatcttcttatacattgccataacattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
4956710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 304
Target Start/End: Complemental strand, 35828442 - 35828192
Alignment:
| Q |
57 |
tcctcaacataaaacttaatctgtttgaacccttttttaaaccacctattctccataatatcaggtattgcaatcctagtttcaggcttagtatcaagaa |
156 |
Q |
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|||||||||||||| ||||| || || || ||| | |||||||| | |||||||||||| ||||| || | ||||||||||| ||| ||| ||||||||| |
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| T |
35828442 |
tcctcaacataaaatttaatatgcttaaaacctatcttaaaccaacgattctccataatctcaggaatagaaatcctagtttgaggtttaatatcaagaa |
35828343 |
T |
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| Q |
157 |
gacgaacaagcagtttcgataaatctggtgaaaaccacctaggacaccgaaactcacccttgtaaattttcttatacattgccataacatttt---gatc |
253 |
Q |
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| | | ||| || | | |||||||||||||| |||||||||| ||| ||||| || ||||| ||||||||||| ||||||||||| | |||| |
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| T |
35828342 |
gcctagtaagaagactaacaagttctggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattaggatc |
35828243 |
T |
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| Q |
254 |
atgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35828242 |
atgaaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaaga |
35828192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 24948133 - 24948074
Alignment:
| Q |
244 |
cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
304 |
Q |
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|||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| |
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| T |
24948133 |
cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaaga |
24948074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 19351256 - 19351197
Alignment:
| Q |
244 |
cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
304 |
Q |
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|||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| |
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| T |
19351256 |
cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaaga |
19351197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 25347436 - 25347377
Alignment:
| Q |
244 |
cattttgatcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaacaccacaaga |
304 |
Q |
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|||||||||||| |||||| ||||||| || |||||||| |||||||| |||||||||||| |
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| T |
25347436 |
cattttgatcat-aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaaga |
25347377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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