View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_low_12 (Length: 239)
Name: NF5597_low_12
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 49693575 - 49693790
Alignment:
| Q |
18 |
ataaaatggttgaagttagtgtttgtagcactcgcactcactc----ctctatcggtcaaatttataaatacaattaaagagtgtaaatagatcccatgc |
113 |
Q |
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| T |
49693575 |
ataaaatggttgaagttagtgtttgtagcactcgcactcactcactcctctatcggtcaa-tttataaatacaattaaagagtgtaaatagatcccatgc |
49693673 |
T |
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| Q |
114 |
ttttaaaaggagagaaagaaaaagggatgagtcctagttgtaattcattccattctatggtcatcggtcataaagaaaaagtaatgaagatgttggaggc |
213 |
Q |
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| T |
49693674 |
ttttaaaaggagagaaagaaaaagggatgagtcctagttgta----attccattatatggtcatcggtcataaagaaaaagtaatgaagatgttggaggc |
49693769 |
T |
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| Q |
214 |
attcccaaaatagatcccatg |
234 |
Q |
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| T |
49693770 |
attcccaaaatagatcccatg |
49693790 |
T |
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