View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_low_14 (Length: 211)
Name: NF5597_low_14
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 7027590 - 7027434
Alignment:
| Q |
55 |
tcctgctaataaaagagtaattttgttaagtcattattnnnnnnnn-ttggatattcaaccgatgaannnnnnnaaaagtaattattttctttaaaaata |
153 |
Q |
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| T |
7027590 |
tcctgctaataaaagagtaattt-gttaagtcattattaaaaaaaaattggatattcaactgatgaatttttttaaaagtaattattttctttaaaaata |
7027492 |
T |
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| Q |
154 |
aattaacagttcacctctaaaggagatggactcaagttataaaactttaagcatagtc |
211 |
Q |
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| T |
7027491 |
aattaacagttcacctctaaaggagatgaactcaagttataaaactttaagcatagtc |
7027434 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 7027632 - 7027603
Alignment:
| Q |
11 |
tattgggaataaaaatcgaatcaaagagga |
40 |
Q |
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| T |
7027632 |
tattgggaataaaaatcgaatcaaagagga |
7027603 |
T |
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