View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_low_2 (Length: 458)
Name: NF5597_low_2
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 28827350 - 28827785
Alignment:
| Q |
9 |
gaagaatatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagctta |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28827350 |
gaagaaaatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagctta |
28827449 |
T |
|
| Q |
109 |
gtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttctacgtctaatgcca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28827450 |
gtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttctacgtctaatgcca |
28827549 |
T |
|
| Q |
209 |
ctgcctccttttctctatcagctcgatgattatatggaacaatgaagggacttgaaccgaaaagataacaataaaccagatgagggttactcttcgttaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28827550 |
ctgcctccttttctctatcagctcgatgattatatggaacaatgaagggacttgaaccgaaaagataacaataaaccagatgagggttactcttcgttaa |
28827649 |
T |
|
| Q |
309 |
ttccaactgttcatcaatcatacaagtacagaagtattatctaatagagataaacagttgcagctac----gttatgaatttattgtctatgtttgttta |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
28827650 |
ttccaactgttcatcaatcatacaagtacagaagtattatctaatagagataaacagttgcagctacgtttgttatgaatttattgtctatgtttgtgta |
28827749 |
T |
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| Q |
405 |
gtttcttaggtttgttcattatgaatttgttgtaag |
440 |
Q |
| |
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| T |
28827750 |
gtttcttaggtttgttcattatgaatttgttgtaag |
28827785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 28836689 - 28837033
Alignment:
| Q |
9 |
gaagaatatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagctta |
108 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||| |
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| T |
28836689 |
gaagaaaatgatagagattgctctgttgtgtactcaagcatcagctggaatgagaccaacaatgtctgaagttgtagtcctccttcaaaccagaagctta |
28836788 |
T |
|
| Q |
109 |
gtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttctacgtctaatgcca |
208 |
Q |
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| T |
28836789 |
gcggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcctctacgtctaatgcca |
28836888 |
T |
|
| Q |
209 |
ctgcctccttttc---tctatcagctcgatgattatatggaacaatgaagggacttgaaccgaaaagataacaataaaccagatgagggttactcttcgt |
305 |
Q |
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||||||||||||| ||||||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
28836889 |
ctgcctccttttcggttctatcagctcgatgattatatggagcagtgaagggacttg---ccaaaagataacaataaaccagatgagggttactcttcgt |
28836985 |
T |
|
| Q |
306 |
taattccaactgttcatcaatcatacaagtacagaagtattatctaat |
353 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28836986 |
taattccaactgttcatcaatcatacaagtacaaaagtattatctaat |
28837033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 28839322 - 28839629
Alignment:
| Q |
9 |
gaagaatatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagctta |
108 |
Q |
| |
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|||||| ||||||| ||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
28839322 |
gaagaaaatgatagtgattgctttattatgtactcaagcatcagctggaatgaaaccaacaatgtctgaagtagtagtcct---ccaaaccaggagctta |
28839418 |
T |
|
| Q |
109 |
gtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttctacgtctaatgcca |
208 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
28839419 |
gtggagcacttgcaaccaactatgcatgtgtttgtagaaacgaatcttaggtctcatgaaggccactctacctcaactggttcttctacctctaatgcta |
28839518 |
T |
|
| Q |
209 |
ctgcctccttttc---tctatcagctcgatgattatatggaacaatgaagggacttgaaccgaaaagataac--aataaaccagatgagggttactcttc |
303 |
Q |
| |
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|||| ||| |||| |||||||||||||| ||| |||||| || | |||||| ||||||| ||||| | || ||||||||||| |||||||||||||| |
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| T |
28839519 |
ctgcatccgtttctgttctatcagctcgattattgtatggagcagtaaagggaattgaaccaaaaaggttacaaaataaaccagaagagggttactcttc |
28839618 |
T |
|
| Q |
304 |
gttaattccaa |
314 |
Q |
| |
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|||||||||| |
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| T |
28839619 |
cttaattccaa |
28839629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 28831276 - 28831371
Alignment:
| Q |
10 |
aagaatatgatagagattgctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagc |
105 |
Q |
| |
|
||||| ||||||||||||||||| | || | ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
28831276 |
aagaaaatgatagagattgctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagc |
28831371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 28837075 - 28837163
Alignment:
| Q |
356 |
agataaacagttgcagctacgtta----tgaatttattgtctatgtttgtttagtttcttaggtttgttcattatgaatttgttgtaag |
440 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
28837075 |
agataaacagttgcagctatgtttattttgaatttattgtctatgtttgtgtagtttattaggtttgttcattatgaatttgttgtaag |
28837163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 1465919 - 1465741
Alignment:
| Q |
97 |
accaggagcttagtggagcacctgcaaccaactatgcctgtgtttgtagaaacgaatcttaggtctcgtgaaggccactctacctcaactggttcttcta |
196 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
1465919 |
accaggagattagtggagcacctgaaaccaactatgtctatgtttgtagaaacaaatcttaggtctcgtgaaggccactctacctcaacttgttattcta |
1465820 |
T |
|
| Q |
197 |
cgtctaatgccactgcctccttttc---tctatcagctcgatgattatatggaacaatgaagggacttgaaccgaaaag |
272 |
Q |
| |
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| |||||||| ||||||||| |||| |||||||||||||||||| |||||| || | |||||| ||||||| ||||| |
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| T |
1465819 |
catctaatgctactgcctccgtttctgttctatcagctcgatgattgtatggagcagtaaagggaattgaaccaaaaag |
1465741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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