View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5597_low_6 (Length: 299)
Name: NF5597_low_6
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 49694281 - 49693993
Alignment:
| Q |
4 |
agcatagggcgccaagctttccttttcagcaaagacctacaacgaaaaccggtccaaaccgggttatttaaaccggtatcatcagaccgaaaaagaccca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694281 |
agcatagggcgccaagctttccttttcagcaaagacctacaacgaaaagcggtccaaaccgggttatttaaaccggtatcatcagaccgaaaaagaccca |
49694182 |
T |
|
| Q |
104 |
tgtttcccaacatcggagaactagcatgtccttcttcatcttcctctctcgatggcgacgacacaaacagatccttgagtgagcttctccgcatcgaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
49694181 |
tgtttcccaacatcggagaactagcatgtccttcttcatcttcctctctcgatggcgaggacacaaacagatccttcaatgagcttctccgcatcgaatc |
49694082 |
T |
|
| Q |
204 |
tttctccttcttctctaacaccgatacgtgtccctgccttcgttgcggtcgcgtcaggcttagcccaagtagagtacggagtgctgttt |
292 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49694081 |
tttatccttcttctccaacaccgacacgtgtccctgccttcgttgcggtcgcgtcaggcttagcccaagtagagtacggagtgttgttt |
49693993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University