View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5597_low_9 (Length: 279)
Name: NF5597_low_9
Description: NF5597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5597_low_9 |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold1344 (1 HSPs) |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 18030842 - 18031095
Alignment:
| Q |
20 |
aatggacaaaggcatgatatcataagattctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatct |
119 |
Q |
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| T |
18030842 |
aatggacaaaggcatgatatcataagattctggaaatatgtcgatgaagtttggcaaatcattaagctccaattcatttagtgaagcaagttggacatct |
18030941 |
T |
|
| Q |
120 |
tggtgttgaccaaatatgtattccagcttatcacaactttgtatcctgattgactttggtaacaaaaggtcttgagcagagagaaatggaaatattgatc |
219 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18030942 |
tggtgtttaccaaatatgtattccagcttatcacaactttctatcatgattgactctggtaacaaaaggtcttgagcagagagaaatggaaatattgatc |
18031041 |
T |
|
| Q |
220 |
gtaataggggacattcaaagattttgagaactttcagctttgaaaacattgagt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031042 |
gtaataggggacattcaaagattttgagaactttcagctttgaaaacattgagt |
18031095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 27370894 - 27370779
Alignment:
| Q |
50 |
tggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagctta |
149 |
Q |
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|||||||||||||||||| |||||| | || ||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| | |
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| T |
27370894 |
tggaaatatgtcgatgaaaattggcacatgatcaagcttcaattcttttagtgaagcgagttgaacatcttggtgttggccaaatatgtattccagctca |
27370795 |
T |
|
| Q |
150 |
tcacaactttgtatcc |
165 |
Q |
| |
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|||||| ||||||||| |
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| T |
27370794 |
tcacaattttgtatcc |
27370779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 27400603 - 27400738
Alignment:
| Q |
19 |
taatggacaaaggcatgatatcataagattctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatc |
118 |
Q |
| |
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||||||| |||||||| || || ||||||||||||||||| ||||||||||||||| ||| ||| | ||||| || |||| |||| ||||||||||| |
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| T |
27400603 |
taatggatgaaggcatggaatgatcagattctggaaatatgttgatgaagtttggcaaatcaacaaggtacaatttttctagtaaagcgagttggacatc |
27400702 |
T |
|
| Q |
119 |
ttggtgttgaccaaatatgtattccagcttatcaca |
154 |
Q |
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|||||||||||||||||||| || |||||||||||| |
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| T |
27400703 |
ttggtgttgaccaaatatgtgtttcagcttatcaca |
27400738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 27344427 - 27344265
Alignment:
| Q |
48 |
tctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagct |
147 |
Q |
| |
|
||||||||||||| |||||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| | ||||| |
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| T |
27344427 |
tctggaaatatgttgatgaaatttggcacaacaagaagctccaattcttttagtgaagcgagtttaacatcttggtgttggccaaatatgtacttcagct |
27344328 |
T |
|
| Q |
148 |
tatcacaactttgtatcctgattgactttggtaacaaaaggtcttgagcagagagaaatggaa |
210 |
Q |
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||||||||| |||| |||| || | | ||||||||| |||| ||||||| || |||||| |
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| T |
27344327 |
cgtcacaacttcttatcatgatagattctagtaacaaaaagtctccagcagagtgacatggaa |
27344265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 26183156 - 26183262
Alignment:
| Q |
50 |
tggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagctta |
149 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||| || |||| | ||||||||| | ||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
26183156 |
tggaaataagtcgatgaaatttggcaaatcatgaatgtccactgtttttagtgatgtaagtttgacatcttggtgttggccaaatatgtattccagcttg |
26183255 |
T |
|
| Q |
150 |
tcacaac |
156 |
Q |
| |
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||||||| |
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| T |
26183256 |
tcacaac |
26183262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 18722984 - 18723077
Alignment:
| Q |
48 |
tctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtatt |
141 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
18722984 |
tctggaaatatgtaaatgaaatttggcacatcatcaagcttcaattcttttagtgaagggagttgaacatcttggtgttggccaaatatgtatt |
18723077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 26238997 - 26239103
Alignment:
| Q |
50 |
tggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagctta |
149 |
Q |
| |
|
|||||||||||||||||| |||||||| || | || | ||| ||||||||||| | |||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
26238997 |
tggaaatatgtcgatgaaatttggcaaatcttcaatcgccacctcttttagtgatgtgagtttgacatcttggtgttggccaaatatgtatttcagcttg |
26239096 |
T |
|
| Q |
150 |
tcacaac |
156 |
Q |
| |
|
||||||| |
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| T |
26239097 |
tcacaac |
26239103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 19467968 - 19467873
Alignment:
| Q |
19 |
taatggacaaaggcatgatatcataagattctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttgga |
114 |
Q |
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|
||||||| |||||||| || || |||||||||||||||||||||||| ||| |||| || |||||||||||| || ||||||||||||||||| |
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| T |
19467968 |
taatggatgaaggcatggaatgattagattctggaaatatgtcgatgaaattttgcaaatctctaagctccaatttttctagtgaagcaagttgga |
19467873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 26211790 - 26211909
Alignment:
| Q |
50 |
tggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagctta |
149 |
Q |
| |
|
|||| ||||||||||||| |||||||| || || | ||| ||||||||||| | |||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
26211790 |
tggacatatgtcgatgaaatttggcaaatctacaatcgccacctcttttagtgatgtgagtttgacatcttggtgttggccaaatatgtatttcagcttg |
26211889 |
T |
|
| Q |
150 |
tcacaactttgtatcctgat |
169 |
Q |
| |
|
||||||| || ||| ||||| |
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| T |
26211890 |
tcacaacattttattctgat |
26211909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 18080734 - 18080790
Alignment:
| Q |
92 |
ttcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagctt |
148 |
Q |
| |
|
||||||||||||||||| || || |||||||||||| ||||||||| ||| |||||| |
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|
| T |
18080734 |
ttcttttagtgaagcaaatttgaaatcttggtgttggccaaatatgcatttcagctt |
18080790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 27400940 - 27401070
Alignment:
| Q |
143 |
cagcttatcacaactttgtatcctgattgactttggtaacaaaaggtcttgagcagagagaaatggaaatattgatcgtaataggggacattcaaagatt |
242 |
Q |
| |
|
|||||||||||||||||||||| |||| || | | || ||||||||| | ||||||| || |||||| ||| || ||||| | || |||| | | || |
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|
| T |
27400940 |
cagcttatcacaactttgtatcatgatagattctagtgacaaaaggtttccagcagagtgatatggaagtataaattgtaattgagggcattgataaata |
27401039 |
T |
|
| Q |
243 |
ttgagaactttcagctttgaaaacattgagt |
273 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |
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|
| T |
27401040 |
ctgagaactttcaggtttggaaacattgagt |
27401070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 72826 - 72925
Alignment:
| Q |
48 |
tctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagct |
147 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||| ||||| |
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|
| T |
72826 |
tctggaaatatgtcgatgaaatttggcacatcatcaagctccaattgttttagtgaagcgagttgggcatcttggtgttggccaaatatgtatttcagct |
72925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 1114 - 952
Alignment:
| Q |
48 |
tctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattccagct |
147 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| ||| |||| |||||||||| | |||| ||||||||||||||| ||||||||||| ||||||| |
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|
| T |
1114 |
tctggaaatatgtcgatgaaatttggcacatcattatgcttcaatatttttagtgaaacgagtttgacatcttggtgttggccaaatatgtactccagct |
1015 |
T |
|
| Q |
148 |
tatcacaactttgtatcctgattgactttggtaacaaaaggtcttgagcagagagaaatggaa |
210 |
Q |
| |
|
||| |||| ||| |||| |||| | | | ||||||||| |||| ||||||| || |||||| |
|
|
| T |
1014 |
tatgacaattttctatcttgatatattctagtaacaaaaagtctccagcagagtgacatggaa |
952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 3880 - 4045
Alignment:
| Q |
45 |
gattctggaaatatgtcgatgaagtttggcaagtcattaagctccaattcttttagtgaagcaagttggacatcttggtgttgaccaaatatgtattcca |
144 |
Q |
| |
|
||||||||||||||||||||||| || |||| | |||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||| || |
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|
| T |
3880 |
gattctggaaatatgtcgatgaaattcggcacacaactaagctgcaattcttttagtgaagcgagtttaacatcttggtgttggccaaatatgtatttca |
3979 |
T |
|
| Q |
145 |
gcttatcacaactttgtatcctgattgactttggtaacaaaaggtcttgagcagagagaaatggaa |
210 |
Q |
| |
|
||| | ||| ||||||| |||| || | | ||||||||| |||| ||||||| ||||||||| |
|
|
| T |
3980 |
gctcaaaacataattgtatcttgatagattctagtaacaaaaagtctccagcagagtgaaatggaa |
4045 |
T |
|
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