View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5598-Insertion-1 (Length: 271)
Name: NF5598-Insertion-1
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598-Insertion-1 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 4346982 - 4346718
Alignment:
| Q |
6 |
cacacacttataagaatacattgaagagccaactagcgacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346982 |
cacacacttataagaatacattgaagagccaactagcgacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctag |
4346883 |
T |
|
| Q |
106 |
aagcgtactgggattgctgcgattgtttgcatttggaaagccttctctacaatatttggaaagccttctccactattgctttcttcttttttgtctttga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4346882 |
aagcgtactgggattgctgcgattgtttgcatttggaaagccttctctacaa-atttggaaagccttctccactattgctttcttcttttttgtctttga |
4346784 |
T |
|
| Q |
206 |
ttagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4346783 |
ttagaatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcacca |
4346718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 4363403 - 4363264
Alignment:
| Q |
14 |
tataagaatacattgaagagccaactagcgacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctagaagcgtac |
113 |
Q |
| |
|
|||||||||||||| |||| | |||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
4363403 |
tataagaatacattaaagatcaaactagtgacttgattgggagaatttaaaacatgtcttagactcacataatcacagaggaattcttcttgaagtgtac |
4363304 |
T |
|
| Q |
114 |
tgggattgctgcgattgtttgcatttggaaagccttctct |
153 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4363303 |
tgagattgctgcgattgtttgcatttggaaaaccttctct |
4363264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 4363006 - 4362907
Alignment:
| Q |
172 |
tctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
271 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4363006 |
tctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaagagcattcattttcatcacca |
4362907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 4122501 - 4122587
Alignment:
| Q |
185 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
271 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || ||||||||| |||| | |||||||| || |||||||||||| ||||| |
|
|
| T |
4122501 |
tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcagcacca |
4122587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 4337337 - 4337251
Alignment:
| Q |
185 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
271 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||| | |||||||||| |||| |||||||||| || ||||||||||| ||||||| |
|
|
| T |
4337337 |
tttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcacca |
4337251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 4319153 - 4319238
Alignment:
| Q |
185 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacc |
270 |
Q |
| |
|
||||||||||| ||| |||| | | |||||||||| | ||||||||| |||| |||||| ||| || |||||||||||||||||| |
|
|
| T |
4319153 |
tttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcacc |
4319238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 4132482 - 4132570
Alignment:
| Q |
183 |
gctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
271 |
Q |
| |
|
||||||||||| | ||| |||| ||| ||| | ||| || |||||||||| ||| | |||||||| || ||||||||||||||||||| |
|
|
| T |
4132482 |
gctttcttcttctctgtttttgtttaaaatgacctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcacca |
4132570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University