View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598-Insertion-2 (Length: 1104)
Name: NF5598-Insertion-2
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 978; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 978; E-Value: 0
Query Start/End: Original strand, 8 - 1043
Target Start/End: Original strand, 6565553 - 6566589
Alignment:
| Q |
8 |
tatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaa |
107 |
Q |
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| T |
6565553 |
tatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaa |
6565652 |
T |
|
| Q |
108 |
actgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagac |
207 |
Q |
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| T |
6565653 |
actgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagac |
6565752 |
T |
|
| Q |
208 |
aaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggatccaaacatca |
307 |
Q |
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| T |
6565753 |
aaggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggatccaaacatca |
6565852 |
T |
|
| Q |
308 |
aaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccaaaagtgcttctagtagaaagctagtaaatggg |
407 |
Q |
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| T |
6565853 |
aaggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccataagtgcttctagtagaaagctagtaaatggg |
6565952 |
T |
|
| Q |
408 |
aagcaattgcattccaaacaagattccttatcatcaataccagaagagaaatctattgaaaagaaaatggctaaagtcatcactccagtgaagaaatcac |
507 |
Q |
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| T |
6565953 |
aagcaattgcattccaaacaagattccttatcatcaataccagaagaaaaatctattgaaaagaaaatggctaaagtcatcactccagtgaagaaatcac |
6566052 |
T |
|
| Q |
508 |
caaccaaacaagaatcagctgacaagtgtgtagaccacgtgaagttgcaggtacttaacgatttccaataattactatatgatgtgcgaaacgattgagg |
607 |
Q |
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| T |
6566053 |
caaccaaacaagaatcagctgacaagtgtgtagatcacgtgaagttgcaggtacttaacaatttccaataattactatatgatgtgcgaaacgattgagg |
6566152 |
T |
|
| Q |
608 |
tgtcatttcaacaatcattttgttttgattgatcagctggagaagagattagtagatcaagaaagagcacaaaattcctccggtgataaggtgttagaag |
707 |
Q |
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| T |
6566153 |
tgtcatttcaacaatcattttgttttgaatgatcagctggagaagagattagtagatcaagaaagagcacaaaattcctcaggtgataaggtgttagaag |
6566252 |
T |
|
| Q |
708 |
ttgatagcacaccaaatagagtttcagaggatatagtcaagtgtttgtgtagcatatttatgagaatttccatattcaaggacaatttaggagaatcgaa |
807 |
Q |
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| T |
6566253 |
ttgatagcacaccaaatagagtttcagaggatatagtcaagtgtttgtgtagcatatttatgagaatttccatattcaaggacaatttaggagaattgaa |
6566352 |
T |
|
| Q |
808 |
aacacctctacgtgatccatatggtatctgttcaatatccaaaacaagagatattggtgcctacaatagcttttgtgagattgaagcttccaccgttgat |
907 |
Q |
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| T |
6566353 |
aacacctctacatgatccatatggtatctgttcaatatccaaaacaagagatattggtgcctacaatagcttttgtgagattgaagcttccgccgttgat |
6566452 |
T |
|
| Q |
908 |
ttcagccgaatgaaaaattcagtgtttctgatcaatcgattaaagtaagtataaagggtcattaactttttgctgatgctacatatggactatgagtgtt |
1007 |
Q |
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| T |
6566453 |
ttcagccgaatgaaaaattcagtgtttctgatcaatcgattaaagtaagtataaagggtcattaactttttgctgatgctacatatggactatgagtgtt |
6566552 |
T |
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| Q |
1008 |
ggtct-atctaaaagaacatgt-caggttcttatttgg |
1043 |
Q |
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| T |
6566553 |
ggtctaatctaaaag-acatgtccaggttcttatttgg |
6566589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 34260974 - 34260848
Alignment:
| Q |
135 |
gagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagacaaggtttatatcaggaagctgtgtaca |
234 |
Q |
| |
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|||||| | |||||||| || || ||||||||||| |||||| | | ||||| | ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34260974 |
gagcttctagctgaagtggcagtgttggaggaagaagtggttaggcttgaagaacaagttgtgaatttcagacaaggtttatatcaagaagctgtttaca |
34260875 |
T |
|
| Q |
235 |
tttcctccaagaggaatgcagaaaatt |
261 |
Q |
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| T |
34260874 |
tttcctcaaagagaaatgctgaaaatt |
34260848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 693 - 775
Target Start/End: Complemental strand, 34260239 - 34260157
Alignment:
| Q |
693 |
ataaggtgttagaagttgatagcacaccaaatagagtttcagaggatatagtcaagtgtttgtgtagcatatttatgagaatt |
775 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||| || ||||||| |||||||| |
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| T |
34260239 |
ataaagtgtcagaagttcatagcacaccaaatagagtttcagaggatcttgtcaagtgtttgtctaacatatttgtgagaatt |
34260157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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