View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598-Insertion-4 (Length: 1010)
Name: NF5598-Insertion-4
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 4 - 534
Target Start/End: Complemental strand, 43134899 - 43134369
Alignment:
| Q |
4 |
aacaagaaatccatttccgcaagtacttactttagtaataagtacattataggtaaaatttagaacttaaactccacatactactacattcccattattt |
103 |
Q |
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| T |
43134899 |
aacaagaaatccatttccgcaagtacttactttagtaataagtacattataggtaaaatttagaatttaaactccacatactactacattcccattattt |
43134800 |
T |
|
| Q |
104 |
ccgaggccttcaagaacattaacgataagtcattaattgtttgtacatggtatatagtatagtaaaaccataaatcatcagtgttaagcgtacacactta |
203 |
Q |
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| T |
43134799 |
ccgaggccttcaagaacattaacgataagtcattaattgtttgtacatggtatatagtatagtaaaaccataaatcatcagtgttaagcgtacacactta |
43134700 |
T |
|
| Q |
204 |
acatttgacttgacactagaacagcattttacgtttatgatttaaattcctaattgttccactctgtccctttcatagtgtggtggataaggtaaacatt |
303 |
Q |
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| T |
43134699 |
acatttgacttgacactagaacagcattttacgtttatgatttaaattcctaattgttccactctgtccctttcatagtgtggtggataaggtaaacatt |
43134600 |
T |
|
| Q |
304 |
atggagctagcagcttaaaagttttgcacctaatcccactcttgaattgatgttcacaccatttttcatcaaaaaggtttggctgtacacatgccatcaa |
403 |
Q |
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| T |
43134599 |
atggagctagcagcttaaaagttttgcacctaatcccactcttgaattgatgttcacaccatttttcatcaaaaaggtttggctgtacacatgccatcaa |
43134500 |
T |
|
| Q |
404 |
caccctgttttcctcatttcataaaatatattacacatccttttcaatgtcgctcgttagtgaatgacagtttaaagagaatgcaatttttattatatag |
503 |
Q |
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| T |
43134499 |
caccctgttttcctcatttcataaaatatattacacatccttttcaatgtcgctcgttagtgaatgacagtttaaagagaatgcaatttttattatatag |
43134400 |
T |
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| Q |
504 |
tttgagtgtacaagcatgatcactgtgattc |
534 |
Q |
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| T |
43134399 |
tttgagtgtacaagcatgatcactgtgattc |
43134369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 616 - 923
Target Start/End: Complemental strand, 43134287 - 43133971
Alignment:
| Q |
616 |
ctcacaatgtagtttgaaaattccaaatttttgttaatattcatataatgttgactttatctatcaaccaaaactcacagactccttcnnnnnnnnnnnn |
715 |
Q |
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| T |
43134287 |
ctcacaatgcagtttgaaaattccaaatttttgttaatatttatataatgttgactttatctatcaaccaaaactcacagactccttcaaaaaaacaaaa |
43134188 |
T |
|
| Q |
716 |
nnnnctcacagactcatgtgattgcacaaataatttgttttattttaatttaattta-----taatttggaaagnnnnnnnn----ctcatttaactttt |
806 |
Q |
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| T |
43134187 |
aa--ctcacagactcatgtgattgcacaaatactttgttttattttaatttaatttaatttataatttgaaaagaaaagaaaaaaactcatttaactttt |
43134090 |
T |
|
| Q |
807 |
agtttgaattggttgaactatcaaactcattttatccaatcaatatactttaacaaaaaactcatttatccattcaattatcttc-atataatcgc-ttt |
904 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
43134089 |
agtttgaattggttgaactatcaaactcattttatccattcaatatactttaacaaaaaactcatttatccattcaattatcttcaatataatcgctttt |
43133990 |
T |
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| Q |
905 |
taacaactctgtctccatc |
923 |
Q |
| |
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|||||||| |||||||||| |
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| T |
43133989 |
taacaactatgtctccatc |
43133971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 43134932 - 43134899
Alignment:
| Q |
122 |
ttaacgataagtcattaattgtttgtacatggta |
155 |
Q |
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| T |
43134932 |
ttaacgataagtcattaatcgtttgtacatggta |
43134899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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