View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598-Insertion-6 (Length: 549)
Name: NF5598-Insertion-6
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 141 - 326
Target Start/End: Original strand, 54160519 - 54160704
Alignment:
| Q |
141 |
aaataaagaacacaatacaaacaaggctacaattcgtatnnnnnnncacctgatcgggagcacgtgtcagaggaggaattagatgatcagcaagttcaat |
240 |
Q |
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| T |
54160519 |
aaatacagaacacaatacaaacaaggccacaatttgtataaaaaaaaacctgatcgggagcacgtgtcagaggcggaattagatgatcagcaagtctgat |
54160618 |
T |
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| Q |
241 |
atcatcattatacccaaactttcttagcatagcccacggtactgcatggtgccatatttttatgaaatcagcgtgtaaagattgaa |
326 |
Q |
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| T |
54160619 |
atcatccatatacccaaactttcttagcatagcccacggtacctcccggtgccatattttcttgaaatcagcgtgtaaagattgaa |
54160704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 281
Target Start/End: Complemental strand, 53866865 - 53866636
Alignment:
| Q |
54 |
ctctgtacacattaaatccaatcttgattagagtaaaataaaagtcccatgttgtgaaaataatgatctcaaacaagtttaatatctaaataaagaacac |
153 |
Q |
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| T |
53866865 |
ctctgtagacgttaaatcaaatcttgattagaatacattgaaagtttcatgttgtaaaaaaattgatctcaaactggtctaataaagaaataaagaacaa |
53866766 |
T |
|
| Q |
154 |
aatacaaacaaggctacaattcgtatnnnnnnn--cacctgatcgggagcacgtgtcagaggaggaattagatgatcagcaagttcaatatcatcattat |
251 |
Q |
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| T |
53866765 |
aatatacacaaggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattat |
53866666 |
T |
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| Q |
252 |
acccaaactttcttagcatagcccacggta |
281 |
Q |
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| T |
53866665 |
atccaaaccttttaagcatagtccatggta |
53866636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 54160455 - 54160520
Alignment:
| Q |
49 |
cgacactctgtacacattaaatccaatctt-gattagagtaaaataaaagtcccatgttgtgaaaa |
113 |
Q |
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| T |
54160455 |
cgacactctgtacaaattaaatccaatctttgattagaataaaataaaagtcccatgttgtcaaaa |
54160520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 53865543 - 53865636
Alignment:
| Q |
370 |
tgtctcccgatggcgtccctttcacaatcatcgatgccccttcccgatatcaaaacatctgtgttttatgttt--aggtttttatcaaaatatg |
461 |
Q |
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| T |
53865543 |
tgtctccggatggcgtacgaatcacaatcatcgacacctcttcccggtatcaaaacatctgtgttttatttttacatttttttatcaaaatatg |
53865636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 17882621 - 17882693
Alignment:
| Q |
187 |
cacctgatcgggagcacgtgtcagaggaggaattagatgatcagcaagttcaatatcatcattatacccaaac |
259 |
Q |
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| T |
17882621 |
cacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaac |
17882693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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