View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_high_10 (Length: 311)
Name: NF5598_high_10
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 6565268 - 6565557
Alignment:
| Q |
1 |
aaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatttgcaatttttcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565268 |
aaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatttgcaatttttcagt |
6565367 |
T |
|
| Q |
101 |
gtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565368 |
gtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactag |
6565467 |
T |
|
| Q |
201 |
acctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcactatat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565468 |
acctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcactatat |
6565557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
127 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
226 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
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| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
|
| Q |
227 |
ctccttatct |
236 |
Q |
| |
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|||||||||| |
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| T |
34261399 |
ctccttatct |
34261390 |
T |
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