View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5598_high_11 (Length: 304)

Name: NF5598_high_11
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5598_high_11
NF5598_high_11
[»] chr8 (1 HSPs)
chr8 (1-294)||(45346177-45346470)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 45346470 - 45346177
Alignment:
Q  1 tgcaaccaccaccgcatcaccgatactcctctcattcccggtccagccggtgctgttcagtccgccatgattcaacgcagaaccctaggttcctccaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45346470 tgcaaccaccaccgcatcaccgatactcctctcattcccggtccagccggtgctgttcagtccgccatgattcaacgcagaaccctaggttcctccaaca 45346371  T
Q  101 cacttcccactcaagaattggttaggcacgttctccaaaatggccatgactccgatctcgatttcaactccaatccatggctctctgctcaaggtttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45346370 cacttcccactcaagaattggttaggcacgttctccaaaatggccatgactccgatctcgatttcaactccaatccatggctctctgctcaaggtttctt 45346271  T
Q  201 aattcattcatttccctctcctgctcaatattcaactgttgctcatgtttcttgtctttttcttacagtccatgtggaatctgttactcctttg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45346270 aattcattcatttccctctcctgctcaatattcaactgttgctcatgtttcttgtctttttcttatagtccatgtggaatctgttactcctttg 45346177  T

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