View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5598_high_15 (Length: 276)

Name: NF5598_high_15
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5598_high_15
NF5598_high_15
[»] chr4 (5 HSPs)
chr4 (17-214)||(56028754-56028951)
chr4 (60-189)||(30508950-30509079)
chr4 (76-152)||(41633262-41633338)
chr4 (46-126)||(18375438-18375518)
chr4 (198-243)||(55743468-55743513)
[»] chr7 (1 HSPs)
chr7 (46-152)||(23991997-23992104)
[»] chr2 (1 HSPs)
chr2 (54-152)||(13686038-13686137)
[»] chr8 (1 HSPs)
chr8 (60-188)||(4794130-4794258)
[»] scaffold0067 (1 HSPs)
scaffold0067 (77-124)||(19342-19389)
[»] chr5 (3 HSPs)
chr5 (50-120)||(40925912-40925983)
chr5 (46-126)||(3456823-3456904)
chr5 (76-169)||(41326526-41326619)
[»] chr3 (2 HSPs)
chr3 (54-152)||(521819-521918)
chr3 (32-126)||(1561288-1561383)
[»] chr1 (1 HSPs)
chr1 (76-152)||(29095600-29095676)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 56028951 - 56028754
Alignment:
Q  17 aaggataggcctatcgaattttttccaatacaactgacaagtttttattgcatgctttgttgttcacttcctatttctccgccacacctctgtgtattgt 116  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  56028951 aaggataggcctatcgaatttttcccgatacaactgacaagtttttattgcatgctttgttgttcactttctatttctccgctacacctctgtgtattgt 56028852  T
Q  117 ggcaagtagtatattgtaatctgctgttctttattcgtaaagagatcgtgatgctccctttctgtagatataatactactcttaagttatttgaaacg 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56028851 ggcaagtagtatattgtgatctgctgttctttattcgtaaagagatcgtgatgctccctttctgtagatataatactactcttaagttatttggaacg 56028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 30509079 - 30508950
Alignment:
Q  60 tttattgcatgctttgttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattcgtaaaga 159  Q
    |||||||||||  || ||||||| ||||||||| || |  ||| |||||||||||| ||||| |||| |||||||||   ||| ||||||||| | ||||    
T  30509079 tttattgcatgacttattgttcatttcctatttttcagttacatctctgtgtattgcggcaaatagtgtattgtaattgactgctctttattcttgaaga 30508980  T
Q  160 gatcgtgatgctccctttctgtagatataa 189  Q
    |||| |||||||||||||||  ||||||||    
T  30508979 gatcatgatgctccctttctagagatataa 30508950  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 41633338 - 41633262
Alignment:
Q  76 ttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattc 152  Q
    ||||||||||||||||| || ||||||||||  || |||||||||||||||  ||||| ||  |||| |||||||||    
T  41633338 ttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattc 41633262  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 18375438 - 18375518
Alignment:
Q  46 acaactgacaagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggcaagtagt 126  Q
    ||||||| |||||||| |||||||| ||| || ||||||||||||||| || ||||||||||  || |||||||||| ||||    
T  18375438 acaactggcaagttttaattgcatgatttatttgttcacttcctattt-tcagccacacctccttgaattgtggcaaatagt 18375518  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 55743513 - 55743468
Alignment:
Q  198 ttaagttatttgaaacgattatgaaactaatcttaatctgattctt 243  Q
    |||||||||||| | | |||||||||||||||||| ||||||||||    
T  55743513 ttaagttatttggaccaattatgaaactaatcttactctgattctt 55743468  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 23991997 - 23992104
Alignment:
Q  46 acaactgacaagtttttattgcatgct-ttgttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgtt 144  Q
    |||||||||||||||| |||||||| | || |||||||||| |||||| || ||||||||||  || |||||||||| ||||  ||||| ||  |||| |    
T  23991997 acaactgacaagttttaattgcatgatatttttgttcactttctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgataggctgct 23992096  T
Q  145 ctttattc 152  Q
    ||||||||    
T  23992097 ctttattc 23992104  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 13686137 - 13686038
Alignment:
Q  54 caagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattc 152  Q
    |||||||| |||||||| ||| || ||||||||||||||| || ||||||||||  || |||||||||||||||  ||||| ||  |||| |||||||||    
T  13686137 caagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattc 13686038  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 4794258 - 4794130
Alignment:
Q  60 tttattgcatgctttgttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattcgtaaaga 159  Q
    ||||||||||  ||| ||||||||||||||||| |  |||| |||||  | ||||||||||| ||||  ||||| ||  |||| | ||||||| | ||||    
T  4794258 tttattgcattgtttattgttcacttcctattttttggccaaacctccatatattgtggcaaatagtgcattgtgattggctgctatttattcttgaaga 4794159  T
Q  160 gatcgtgatgctccctttctgtagatata 188  Q
    ||| |||||||| |||||||  |||||||    
T  4794158 gattgtgatgcttcctttctagagatata 4794130  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 19342 - 19389
Alignment:
Q  77 tgttcacttcctatttctccgccacacctctgtgtattgtggcaagta 124  Q
    |||||||||||||||| || || ||||||| |||||||||||||||||    
T  19342 tgttcacttcctatttttctgctacacctccgtgtattgtggcaagta 19389  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 40925983 - 40925912
Alignment:
Q  50 ctgacaagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggca 120  Q
    |||||||||||| |||| ||| ||| || ||||||||||||||| || ||||||||||| || |||||||||    
T  40925983 ctgacaagttttaattgtatgatttatttgttcacttcctatttttcagccacacctctttgaattgtggca 40925912  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 3456904 - 3456823
Alignment:
Q  46 acaactgacaagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggcaagtagt 126  Q
    ||||| |||||||||| |||||||| ||| || ||||||||||||||| || | ||||||||  || |||||||||| ||||    
T  3456904 acaaccgacaagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctccttgaattgtggcaaatagt 3456823  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 41326526 - 41326619
Alignment:
Q  76 ttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattcgtaaagagatcgtgatg 169  Q
    ||||| ||||||||||| || ||||||||||  || |||||| ||| ||| | ||||| ||  |||| ||||||||| | ||||||||||||||    
T  41326526 ttgtttacttcctatttttcagccacacctccttgaattgtgtcaaatagcacattgtgattggctgctctttattcttgaagagatcgtgatg 41326619  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 521819 - 521918
Alignment:
Q  54 caagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattc 152  Q
    |||||||| |||||||| ||| || ||||||||||||||| || ||||||||||  || |||||||||| ||||  ||||| ||  |||| |||||||||    
T  521819 caagttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattc 521918  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 1561288 - 1561383
Alignment:
Q  32 gaattttttccaatacaactgacaagtttttattgcatgctttgtt-gttcacttcctatttctccgccacacctctgtgtattgtggcaagtagt 126  Q
    ||||||||||  | ||| |||||||||||  |||||||| ||| || ||||||||||||||| || ||||||||||  || |||||||||| ||||    
T  1561288 gaattttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagt 1561383  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 29095600 - 29095676
Alignment:
Q  76 ttgttcacttcctatttctccgccacacctctgtgtattgtggcaagtagtatattgtaatctgctgttctttattc 152  Q
    ||||||||||||||||| || ||||||||||  || |||||||||| ||||  ||||| ||  |||| |||||||||    
T  29095600 ttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattc 29095676  T

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