View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_high_18 (Length: 258)
Name: NF5598_high_18
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 54980372 - 54980598
Alignment:
| Q |
17 |
ctgtggaacatgttgttattgtgtagaaaaactcaacttggaataaattctcagctgagttacctttggaaatctcagaagcgtcttctttggtattgat |
116 |
Q |
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| T |
54980372 |
ctgtggaacatgttgttattgtgtagaaaaactcaacttggaataaattctcagctgagttacctttggaaatctcagaagcttcttcttcggtattgat |
54980471 |
T |
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| Q |
117 |
tcagttaagttcgaataaaattttcggtcacatgccagaaggtataggaaaatttaagaaactaactagtcttactttgtataagaacaatctttctggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54980472 |
tcagttaagttcgaataaaattttcggtcacatgccagaaggtataggaaaattgaagaaactaactagtcttactttgtataagaacaatctttctggt |
54980571 |
T |
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| Q |
217 |
gttctacctgattctataggttcttgt |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
54980572 |
gttctacctgattctataggttcttgt |
54980598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 2398801 - 2398982
Alignment:
| Q |
62 |
aattctcagctgagttacctttggaaatctcagaagcgtcttctttggtattgattcagttaagttcgaataaaattttcggtcacatgccagaaggtat |
161 |
Q |
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||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||| ||||| ||||||||| || ||| ||| |
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| T |
2398801 |
aattctcaggtgagttaccaatggaaatctcagaagctagttctttggtttcaattcagttaagttcgaatagaatttccggtcacataccggaaactat |
2398900 |
T |
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| Q |
162 |
aggaaaatttaagaaactaactagtcttactttgtataagaacaatctttctggtgttctacctgattctataggttcttgt |
243 |
Q |
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||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
2398901 |
aggcaaattgaagaaactaactagtcttactttgaataacaacaatgtttctggtattctacctgattctattggttcttgt |
2398982 |
T |
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