View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5598_high_21 (Length: 248)
Name: NF5598_high_21
Description: NF5598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5598_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 14267965 - 14267746
Alignment:
| Q |
23 |
attttataatcagcaaaattctcttattaattgaaaaatttattttcaaaaacatgcaggatcttgatcaaaacattgtagcagaaattgatacacttaa |
122 |
Q |
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| T |
14267965 |
attttataattagataaattttcttactaattgaaaattttattttcaaacacttgcaggaacttgatcagaatattgtaacacaaattgatacacttaa |
14267866 |
T |
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| Q |
123 |
aagtgaagtgagaaatatgcttgtcgcagaaacagatgagcctttcgcgaaagttaaactggttgattcaatatgtcgtttgggtgtgagttatcacttt |
222 |
Q |
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| T |
14267865 |
aagtgaagtgagaaatatgcttgtcgcaaaaacagatgagcctttcgcgaaagttaaactggttgattcaatatgtcgtttgggtgtgagttatcacttt |
14267766 |
T |
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| Q |
223 |
gaaaaagaaattgatgatgt |
242 |
Q |
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| T |
14267765 |
gaaaaagaaattgatgatgt |
14267746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 31159004 - 31159055
Alignment:
| Q |
185 |
ttgattcaatatgtcgtttgggtgtgagttatcactttgaaaaagaaattga |
236 |
Q |
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| T |
31159004 |
ttgattcaatatgtcgtttgggtgtgagctatcattttgaaaatgagattga |
31159055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 31198372 - 31198423
Alignment:
| Q |
185 |
ttgattcaatatgtcgtttgggtgtgagttatcactttgaaaaagaaattga |
236 |
Q |
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| T |
31198372 |
ttgattcaatatgccgcttgggtgtgagttatcactttgaaaaggagattga |
31198423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 17179225 - 17179279
Alignment:
| Q |
185 |
ttgattcaatatgtcgtttgggtgtgagttatcactttgaaaaagaaattgatga |
239 |
Q |
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| T |
17179225 |
ttgattcaatatgtcgtttgggtgtgaactatcattttcaacatgaaattgatga |
17179279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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